 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
RrC536_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
C3H |
| Protein Properties |
Length: 260aa MW: 29837.7 Da PI: 8.3869 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC536_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 17.8 | 5.8e-06 | 95 | 115 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25
+ C+ f+ G C +G+ C + H
RrC536_p1 95 RVCS-FYTIGRCTRGAECAYLH 115
6799.6666************* PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 260 aa
Download sequence Send
to blast |
TIANYDKECK VCTRPFTVFR WQPGQKSRYK KTEICQTCSK LKNVCQVCLL DLEYGLPVQT 60
RAGLDCESSF GTMGPNDTLL RLRRKEPYHE RNQPRVCSFY TIGRCTRGAE CAYLHEMPKT 120
GELSHQNIKD RYYGKAGEMG TLEPPEDESI KTLYIGGVNS RILEEDIRDQ FHAYGEIESI 180
RILAEKAFIN GQRLKLTWGR PKFSKSDQKS WDQQGSVAQQ QYYMQHPRPS NQDMPYYPSM 240
DPQRMGAAIS TQELGSSSTS
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5mqf_P | 1e-67 | 1 | 212 | 37 | 316 | Pre-mRNA-splicing factor RBM22 |
| 5xjc_O | 1e-67 | 1 | 212 | 37 | 316 | Pre-mRNA-splicing factor RBM22 |
| 5yzg_O | 1e-67 | 1 | 212 | 37 | 316 | Pre-mRNA-splicing factor RBM22 |
| 5z56_O | 1e-67 | 1 | 212 | 37 | 316 | Pre-mRNA-splicing factor RBM22 |
| 5z57_O | 1e-67 | 1 | 212 | 37 | 316 | Pre-mRNA-splicing factor RBM22 |
| 6ff4_P | 1e-67 | 1 | 212 | 37 | 316 | Pre-mRNA-splicing factor RBM22 |
| 6ff7_P | 1e-67 | 1 | 212 | 37 | 316 | Pre-mRNA-splicing factor RBM22 |
| 6icz_O | 1e-67 | 1 | 212 | 37 | 316 | Pre-mRNA-splicing factor RBM22 |
| 6id0_O | 1e-67 | 1 | 212 | 37 | 316 | Pre-mRNA-splicing factor RBM22 |
| 6id1_O | 1e-67 | 1 | 212 | 37 | 316 | Pre-mRNA-splicing factor RBM22 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC022464 | 2e-46 | AC022464.4 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I, complete sequence. |
| GenBank | AY054519 | 2e-46 | AY054519.1 Arabidopsis thaliana Unknown protein (At1g07360; F22G5.30) mRNA, complete cds. |
| GenBank | AY114632 | 2e-46 | AY114632.1 Arabidopsis thaliana unknown protein (At1g07360) mRNA, complete cds. |
| GenBank | CP002684 | 2e-46 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
