PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5361_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 866aa    MW: 97599.1 Da    PI: 6.2987
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5361_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45e-08275297326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  ++C+ffa+ G+C++Gd C F+H 
  RrC5361_p1 275 IARCKFFAE-GFCPFGDECWFSHH 297
                 579******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-5271299IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5272298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892273299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5274297IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-6274297IPR000571Zinc finger, CCCH-type
SMARTSM006458.1E-4483700IPR000668Peptidase C1A, papain C-terminal
SuperFamilySSF540011.65E-14490688No hitNo description
Gene3DG3DSA:3.90.70.107.0E-15490688No hitNo description
PfamPF001124.4E-9490686IPR000668Peptidase C1A, papain C-terminal
SuperFamilySSF1014471.1E-6794865No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MVVSQKLKEA EDTGQYSLLL VFFPSLRFAA GEPSDLVSTF HHSHVVEAEF TEQDSLLMTR  60
NFLATAMFNE GLFYLNDEYM KLMPMDAAES HLLIEKGVYN GLLRKYFIFR ICETLVSSRD  120
RHGGTFKSTA YITLNQLRRS SKLGELMTTL DKMLDEPQDY KPPFFWGCLE TEAQYPLMVE  180
VGNVNRKRLV LTLKISHSQG NYLELTDVFS NFPLLSLAIS EDIMDQLETE VVISETGKDT  240
YVKNRDKGKS IIEPCENEND FMQDYGKRTR LVTKIARCKF FAEGFCPFGD ECWFSHHVGS  300
DGNSCCIFSC EASGSDSKGK SVLELCENEN YLDPLKLKKG SEAVGDADSS RFVLGRCCWD  360
TSVSKVFRKP ELSLAGVRPG NKTPLETAKE SVRVYPDHVL TPPNLRKIFG QKLYDMCYGK  420
GVPPLPDISC WFERFKNKND KAIYENQLLR WRSPKRSPNW GEGVTRVNRE WVKLSEGDKK  480
KVGPIRSEEE HKVVGDVRDQ GNHQLCAAYV CVNLVSSLRV IEGDDKEFVN LSVKELCFSA  540
CGPVQEGHKC RAMLLTSGLN FIKDHGVTEQ RGAEGDSFSC VTDKPPRKSN AKKIRIAEYG  600
YLGNDTHRAL KRLETQPIGA TLVIFSDYWG IQKGEIYRGP KSDRSRYEAL HGVTIVDAFL  660
IDGELVYWCK SSHGEEYHDK GYVLVSGETM VLSHHFSAGR GESTFGVNRG VGGDTALALS  720
RPKGLIHEFL RGFVKVLTLF SYILGNIVDV KGEMINFAAS SDSNSIPMKG STTEEASSVT  780
VFCIYHILYY IFSTYQETVT KFLETAVKET KKIETEDGST LFAVKEITET FHGDSAKEEA  840
QLLRVFVIVR DFMSILDKVC NEMEAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487439.10.0PREDICTED: uncharacterized protein LOC108857929
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2170323