PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5358_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 313aa    MW: 35761.9 Da    PI: 6.9909
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5358_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-05193215123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC+ Cgk+F++   L  H  +H
  RrC5358_p3 193 FKCETCGKVFKSYQALGGHRASH 215
                 89***********9999998887 PP
2zf-C2H2130.00031244266123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C ++Fs+   L  H r+H
  RrC5358_p3 244 HQCPICFRVFSSGQALGGHKRSH 266
                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0592940IPR007087Zinc finger, C2H2
PfamPF139122.0E-11192217IPR007087Zinc finger, C2H2
SuperFamilySSF576672.08E-7192266No hitNo description
PROSITE profilePS5015711.676193220IPR007087Zinc finger, C2H2
SMARTSM003550.013193215IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
PfamPF139122.3E-10244266IPR007087Zinc finger, C2H2
PROSITE profilePS501579.141244266IPR007087Zinc finger, C2H2
SMARTSM003550.081244266IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280246266IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MLPFSRHMFG QRFVLVRIKL LGVEDGEIQV ALGGHMRSHM LTLSSKRDLY QEEERLPSQL  60
SEETESDASS SFDEEEEDHL KSTRVDDKEM EFGFSESETE SSRNINPTRR RSKRTRKLGS  120
FDFDFKKLKT VQDGETEHHH SSASDTTTEE DLAFCLIMLS RDKWKKKQTV VEEEEDDESD  180
HHECKNRGGR GRFKCETCGK VFKSYQALGG HRASHKKNKT FTKTEHEKTE YSVNGGGVSE  240
KKIHQCPICF RVFSSGQALG GHKRSHGINN IVSGRVLSVN GIVRIPKEVK DHRMIDLNLP  300
APNEEDHEPS VKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018465594.11e-177PREDICTED: zinc finger protein ZAT4-like
SwissprotQ9SHD01e-94ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLA0A3P6D0F91e-115A0A3P6D0F9_BRACM; Uncharacterized protein
STRINGBra040325.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-74C2H2-like zinc finger protein