PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 412aa MW: 47091.6 Da PI: 5.8406

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5355_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.5	1.8e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeel+++yLk+k++g+++el e+i+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v ++ RrC5355_p1 6 LPPGFRFHPTDEELITYYLKRKINGREIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVSL-RD 102 79**************************.99***********6345667999**********************************.88 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++g+kktLv+y+grap+g +t Wvmheyrl RrC5355_p1 103 RAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133 99*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-63	4	158	IPR003441	NAC domain
PROSITE profile	PS51005	61.079	6	158	IPR003441	NAC domain
Pfam	PF02365	2.3E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSL RDRAIGTKKT LVYYRGRAPH 120 GIRTGWVMHE YRLDETECEP TAFGMQVDAY ALCRVFKKMI VEAKPRSDQH HHQHNVNTSS 180 NISGNSSFDV GSDLEISSNT YQVQPNYNNA IETQPRFGNA NAIGDHDDWS QYLSQGMPSG 240 FSNYGSPYGS YLTQQNVNTE IDCGMLQHQV SLPPLQVENS PVQTSDFSNG MNQNSGQCGF 300 NDFTFVASGS RTNAINNIEI DDFFSLENQV EEDTDKTMIE ENIRADHKML ICTRQTTEVL 360 YYQVVPSQIL KIQINPVQGI EERTLFIEEE GKDSWFKKAE NVAKMKMKQI GL

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSL RDRAIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDETECEP TAFGMQVDAY ALCRVFKKMI VEAKPRSDQH HHQHNVNTSS  180
NISGNSSFDV GSDLEISSNT YQVQPNYNNA IETQPRFGNA NAIGDHDDWS QYLSQGMPSG  240
FSNYGSPYGS YLTQQNVNTE IDCGMLQHQV SLPPLQVENS PVQTSDFSNG MNQNSGQCGF  300
NDFTFVASGS RTNAINNIEI DDFFSLENQV EEDTDKTMIE ENIRADHKML ICTRQTTEVL  360
YYQVVPSQIL KIQINPVQGI EERTLFIEEE GKDSWFKKAE NVAKMKMKQI GL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-56	2	158	11	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB005238	1e-104	AB005238.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKP11.
GenBank	CP002688	1e-104	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_197228.1	0.0	NAC domain containing protein 86
Swissprot	Q9FFI5	0.0	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	D7LWY7	0.0	D7LWY7_ARALL; ANAC086 (Fragment)
STRING	fgenesh2_kg.6__1724__AT5G17260.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4411	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	0.0	NAC domain containing protein 86

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]