PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC533_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 339aa    MW: 36946.6 Da    PI: 10.3448
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC533_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.4e-30270328259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYeg+H h 
  RrC533_p3 270 ADEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDAMMLIVTYEGDHSHA 328
                69*************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.0E-16234267IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.5E-32257328IPR003657WRKY domain
PROSITE profilePS5081129.459264330IPR003657WRKY domain
SuperFamilySSF1182902.62E-25267328IPR003657WRKY domain
SMARTSM007742.9E-36269329IPR003657WRKY domain
PfamPF031068.8E-26271327IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAVELMMNSS YGGVRVKGED GVFSANIEED TALREAASAG IHGVKEFLKL IGQKSQPTEI  60
TAVTDVAVNS FKKVISLLGR SRTGHARFRR GPATTKTEES GGDWKTEEKP ATTTTTVVLN  120
RQKTEQNGGS AFRVYCPTPI HRRPPLSHNH NNNSPTIKNG SSSSANGRPQ QEPSTINFAP  180
SPPVSAANSF MSSHRCDTES NQMSSGFEFT NPTSQVSGSI GKPPLSSVSL KRKCNSSPSG  240
RCHCTKKRKS RVKRVIRVPA VSSKMADIPA DEYSWRKYGQ KPIKGSPHPR GYYKCSSVRG  300
CPARKHVERA LDDAMMLIVT YEGDHSHALV LESHHDKAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21257329273WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230248KRKCNSSPSGRCHCTKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931320.0KM593132.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472336.10.0PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 7
SwissprotQ9STX01e-175WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A398ATE90.0A0A398ATE9_BRACM; Uncharacterized protein
STRINGBo1g037740.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-162WRKY DNA-binding protein 7