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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
RrC5327_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
GRAS |
| Protein Properties |
Length: 514aa MW: 57624.8 Da PI: 4.8985 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC5327_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 245 | 3e-75 | 148 | 514 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilkfshlt 97
++lL cA a+++++ +++q++++ lselas++gd+++Rla++ + AL+++++ s + ++ ++ + + s+e+ +++k+ f+evsP++ + + +
RrC5327_p1 148 EQLLNPCALAITARNSSRVQHYICVLSELASSSGDANHRLASFGLSALRKHIST--SFVPSSPSSVTFA---SAEVKMFQKTllkFYEVSPWFALPNNM 241
689**************************************************9..3333333333333...4455555555667************** PP
GRAS 98 aNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrle 187
aN+aIl+ +++e + +Hi+D+++s+G+QWp+Ll+aL +Rpegpp ++RiT+v++ +++ +++++L fA++l+++++++v+
RrC5327_p1 242 ANSAILQILAQEprdkKDLHILDIGVSHGMQWPTLLEALCCRPEGPPlQVRITVVSDLTADipfsVGPPSYNYASQLIGFARSLNINLQISVI------ 334
***********99888889************************99999*********99999998888999********************96...... PP
GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseer 282
+++ ++++++E+ +V+ +++l++l +++++r e Lk+++sl+Pk v+++e+ + +s+ +F++ f+++l+y ++++ds++ ++ +e+
RrC5327_p1 335 -DKFQLIDTSHHETFIVCAQFRLYQLK---NTIPDARCEALKALRSLNPKGVILCEHYGEGSSSssnvDFAADFSKKLDYLWKFLDSTSYGF----KEE 425
.5568889******************8...78888889******************9755533334559*********************98....666 PP
GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv..lgWkdrpLvsvSaWr 374
+ Er+l++ e+++v++ +g+ e +e W er+++ GF++ +++e+a + ak+llrk++ + ++++ e+g + l Wk++++ ++S W+
RrC5327_p1 426 NGEERKLMEGEATKVLMSSGDT----SEGKEMWYERMRKTGFSAEAFGEDAIDGAKSLLRKYDnN--WEIKMEDGDTFagLLWKGEEVSFCSLWK 514
77788889999**********9....9999*********************************44..6666444433336**************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0042446 | Biological Process | hormone biosynthetic process |
| GO:2000032 | Biological Process | regulation of secondary shoot formation |
| Sequence ? help Back to Top |
| Protein Sequence Length: 514 aa
Download sequence Send
to blast |
MSLEETEPPS QTLDNVLGWF DDSISLTPLP GFSDSDLLNE FDWSQTWEWD HQTQTQDPGF 60
DFLHSYSQDL NAYIGCEAAN VEVATGVPVI DSDPPPVLQL PNDQSKKRNR DELNDPHVVK 120
RSARSKKKAD KSSEVSRKDV NKVERWAEQL LNPCALAITA RNSSRVQHYI CVLSELASSS 180
GDANHRLASF GLSALRKHIS TSFVPSSPSS VTFASAEVKM FQKTLLKFYE VSPWFALPNN 240
MANSAILQIL AQEPRDKKDL HILDIGVSHG MQWPTLLEAL CCRPEGPPLQ VRITVVSDLT 300
ADIPFSVGPP SYNYASQLIG FARSLNINLQ ISVIDKFQLI DTSHHETFIV CAQFRLYQLK 360
NTIPDARCEA LKALRSLNPK GVILCEHYGE GSSSSSNVDF AADFSKKLDY LWKFLDSTSY 420
GFKEENGEER KLMEGEATKV LMSSGDTSEG KEMWYERMRK TGFSAEAFGE DAIDGAKSLL 480
RKYDNNWEIK MEDGDTFAGL LWKGEEVSFC SLWK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JX242547 | 0.0 | JX242547.1 Sinapis alba isolate SaNSP1 nodulation signaling pathway 1-like protein gene, complete cds. |
| GenBank | JX242549 | 0.0 | JX242549.1 Hirschfeldia incana isolate HiNSP1 nodulation signaling pathway 1-like protein gene, complete cds. |
