PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Regulation |

Basic Information? help Back to Top

TF ID

RrC5323_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

CPP

Protein Properties

Length: 180aa MW: 18919.6 Da PI: 8.9788

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5323_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	53.4	5.1e-17	32	71	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cs++C+C +CkN e RrC5323_p2 32 KHHKGCHCKKSGCLKKYCECFQANILCSDNCRCLGCKNFE 71 589***********************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	18.445	1	72	IPR005172	CRC domain
SMART	SM01114	7.8E-20	32	73	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.7E-13	35	70	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MLSGLKSLAV HTMLEITGYT YEVVGGVVML GKHHKGCHCK KSGCLKKYCE CFQANILCSD 60 NCRCLGCKNF EGSEDRLALF HGEHSHGAAY LQHANAAITG AVGSSGFASS PAPKRRKAQD 120 IFFNQGAKDS SINRLGQGSS GKTTSSKPVS GRGGPSKVSL GRYNSTTGCQ SALFCSGCCI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	7e-16	32	81	83	132	Protein lin-54 homolog
5fd3_B	7e-16	32	81	83	132	Protein lin-54 homolog
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018438194.1	1e-94	PREDICTED: protein tesmin/TSO1-like CXC 6
Swissprot	Q9SL70	2e-69	TCX6_ARATH; Protein tesmin/TSO1-like CXC 6
TrEMBL	M4FIW3	4e-89	M4FIW3_BRARP; Uncharacterized protein
STRING	Bra041042.1-P	7e-90	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20110.1	1e-49	Tesmin/TSO1-like CXC domain-containing protein