PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC5256_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 195aa MW: 22583.6 Da PI: 9.8622 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W +eEd +l ++v+ +G g+W+ I+r+ g++R++ +c++rw +yl RrC5256_p2 14 RGLWKPEEDMILRRCVESHGEGNWADISRRSGLKRSGRSCRLRWKNYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.3e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++++E++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l RrC5256_p2 67 RGGMSPQEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 112 6779******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.641 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.43E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.61E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 19.831 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.08E-11 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MEKREEKRKS HAKRGLWKPE EDMILRRCVE SHGEGNWADI SRRSGLKRSG RSCRLRWKNY 60 LRPNIKRGGM SPQEQDLIIR MHKLLGNRWS LIAGRLPGRT DNEVKNYWNT HLNKKSNSRI 120 QNAPESGEAP PDKPVMSTGV RQSHGEEVTI TNWVEETNYF GYDVCMGSPL PLISHYTDNL 180 VFDPCSAFTD FFPLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-23 | 14 | 118 | 7 | 110 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 10 | KRKSH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018474701.1 | 1e-143 | PREDICTED: transcription factor MYB82-like | ||||
Swissprot | Q9LTF7 | 1e-110 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | A0A078J210 | 1e-114 | A0A078J210_BRANA; BnaA03g12580D protein | ||||
TrEMBL | A0A397ZUR0 | 1e-114 | A0A397ZUR0_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EJZ6 | 1e-114 | M4EJZ6_BRARP; Uncharacterized protein | ||||
STRING | Bra029113.1-P | 1e-115 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 5e-99 | myb domain protein 82 |