PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC5237_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 362aa MW: 39551.3 Da PI: 6.1599

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5237_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.1	1e-05	252	290	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++++ + L++l+ + +K + a++L++ +eYIk L RrC5237_p1 252 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQESIEYIKFL 290 5788999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.585	241	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.98E-10	251	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.65E-6	251	294	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.5E-8	255	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MAEEFQATAA ICGSGGGAWW NSPRSVMSPS DNLLSSCFGQ RDADSDSGGS TVSIDSTLQM 60 MGLGFSSNSS SDWNETVLQE DLNSSFISSQ DHYQGQGFLS TTSSPYLLNP ACSSSSSPSS 120 SSSSLLQTLY DPEPSPYRFL STTSCSINDP QLSWASSKTS PHHQAAYGII NNFSNNTNSR 180 PFWSSSSTTN LNNTPHNSFI TTSQTIPTRL EERTKNQKTK GQSESLKRAK NDESPSKKQR 240 ISTPSPLPTF KVRKENLRDQ ITSLQQLVSP FGKTDTASVL QESIEYIKFL HDQVIVLSTP 300 YMKQGASVQQ QHQESGKNQN VNENQELRAH GLCLVPVSST FPVANETTVD FWTPTFGGSS 360 FR

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MAEEFQATAA ICGSGGGAWW NSPRSVMSPS DNLLSSCFGQ RDADSDSGGS TVSIDSTLQM  60
MGLGFSSNSS SDWNETVLQE DLNSSFISSQ DHYQGQGFLS TTSSPYLLNP ACSSSSSPSS  120
SSSSLLQTLY DPEPSPYRFL STTSCSINDP QLSWASSKTS PHHQAAYGII NNFSNNTNSR  180
PFWSSSSTTN LNNTPHNSFI TTSQTIPTRL EERTKNQKTK GQSESLKRAK NDESPSKKQR  240
ISTPSPLPTF KVRKENLRDQ ITSLQQLVSP FGKTDTASVL QESIEYIKFL HDQVIVLSTP  300
YMKQGASVQQ QHQESGKNQN VNENQELRAH GLCLVPVSST FPVANETTVD FWTPTFGGSS  360
FR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018452285.1	0.0	PREDICTED: transcription factor bHLH112-like
Swissprot	Q94JL3	0.0	BH112_ARATH; Transcription factor bHLH112
TrEMBL	M4EE69	0.0	M4EE69_BRARP; Uncharacterized protein
STRING	Bra027080.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8062	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen HC, et al. The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis. Plant Mol. Biol., 2017. 94(4-5): p. 531-548 [PMID:28631168]