PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5221_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 469aa    MW: 52257.7 Da    PI: 6.0703
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5221_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.5e-35251152101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye+++d++++e++sws+n+nsf+v+++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k++k+ll++i+
    RrC5221_p2  25 FLVKTYEMVDDSSTDEIVSWSSNNNSFIVWNHAEFSRLLLPSYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFSNDDFIKDEKHLLKNIH 112
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
    RrC5221_p2 113 RRK 115
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.58E-3521114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-5921114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.3E-3721114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.6E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.7E-3025114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.6E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.6E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MNGALGNSSA SANGGGDGAG GPAPFLVKTY EMVDDSSTDE IVSWSSNNNS FIVWNHAEFS  60
RLLLPSYFKH NNFSSFIRQL NTYGFRKIDP ERWEFSNDDF IKDEKHLLKN IHRRKPIHSH  120
SHPPVSSVDQ ERAALQEQMD KLSREKAAIE AKLLKFKQHK STAKHNLDEM AEHVDDMEKR  180
QEKLMSFLET AMRNPTFIKN FGRKVEELDV SAYSKKRRLP QVEQSKPPSE DSHLDDNSSG  240
SSRPESGNIF HQNFSSKLRL ELSPAVSDMN MVSHSIQSSN EGASPKGSDP KTTQTRREGL  300
PFAPEALELA DTGSCPGILL LNDKTITEPL QQMITSSEET DGSFSCHLNL TLASAPLPDK  360
TASQIAKTTH KSQETGRVTE LNFNSIETSA ASEKNRGQQE VAAGGGKQAN AAPPARVNDV  420
FWEQFLTERP GSSDNEEASS TYRENPCEEP EEKRNGHVMS RHINDNSLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2331141129Heat shock factor protein 1
5d5v_B2e-2331141129Heat shock factor protein 1
5d5v_D2e-2331141129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485252.10.0PREDICTED: heat stress transcription factor A-5
SwissprotQ94BZ50.0HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A3P6BWS40.0A0A3P6BWS4_BRAOL; Uncharacterized protein
STRINGBra032752.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101342433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.10.0HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]