 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC5216_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
C2H2 |
| Protein Properties |
Length: 494aa MW: 53453.1 Da PI: 9.5794 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC5216_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.9 | 7.5e-05 | 65 | 87 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C C+k F r nL+ H r H
RrC5216_p1 65 FICDVCKKGFQREQNLQLHRRGH 87
89*******************88 PP
|
| 2 | zf-C2H2 | 12.8 | 0.00036 | 141 | 163 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC +C+k++ +s+ k H +t+
RrC5216_p1 141 WKCDKCSKRYAVQSDWKAHSKTC 163
58*****************9998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 494 aa
Download sequence Send
to blast |
MSSSSYNTSV VPSSPSTQPF FITGSGAGDN AFDRKDTFMS MIQQPNSSAP QPKKRRNQPG 60
NPSKFICDVC KKGFQREQNL QLHRRGHNLP WKLKQKSTKE VKRKVYICPE PTCVHHDPSR 120
ALGDLTGVKK HYYRKHGEKK WKCDKCSKRY AVQSDWKAHS KTCGTKEYRC DCGTIFSRRD 180
SYITHRAFCD ALIQETARNP TMTLTSITAA SSGAGFGGFH GRLEGGNALS HNHLSDHTNS 240
GFSSFSGYNL NFPSSGNSRD FAPQTSNPNF LIQYSSSQGI VTVPNNNNNN NDQSFMNQQG 300
LIHFDPVNNI NLKSSTTNNS LFNIGFFQEN TKNSETTLPS LYSTDALVHH GEGSLNVNSN 360
VSATALLQKA TQLGSITSND PSTLFRGLGS SSNSSSVVVN DFGGGHIMGN DNNGNLQGLM 420
NSVVAVNGGG TGGSGGNIFD VDFGNNNGNM SGSDNLTLDF LGVGGMVRNV NRGGAGRGRV 480
RGDVSLIGEL KFPE
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
| Annotation -- Protein
? help Back to Top |
| Source |
Hit ID |
E-value |
Description |
| Refseq | XP_013599228.1 | 0.0 | PREDICTED: protein indeterminate-domain 4, chloroplastic-like |
| Refseq | XP_013599229.1 | 0.0 | PREDICTED: protein indeterminate-domain 4, chloroplastic-like |
| Refseq | XP_013599230.1 | 0.0 | PREDICTED: protein indeterminate-domain 4, chloroplastic-like |
| Refseq | XP_013599231.1 | 0.0 | PREDICTED: protein indeterminate-domain 4, chloroplastic-like |
| Refseq | XP_013599232.1 | 0.0 | PREDICTED: protein indeterminate-domain 4, chloroplastic-like |
| Refseq | XP_013599233.1 | 0.0 | PREDICTED: protein indeterminate-domain 4, chloroplastic-like |
| Refseq | XP_013599234.1 | 0.0 | PREDICTED: protein indeterminate-domain 4, chloroplastic-like |
| Refseq | XP_013736158.1 | 0.0 | protein indeterminate-domain 4, chloroplastic-like |
| Refseq | XP_013736159.1 | 0.0 | protein indeterminate-domain 4, chloroplastic-like |
| Refseq | XP_013736160.1 | 0.0 | protein indeterminate-domain 4, chloroplastic-like |
| Refseq | XP_013736161.1 | 0.0 | protein indeterminate-domain 4, chloroplastic-like |
| Refseq | XP_022560774.1 | 0.0 | protein indeterminate-domain 4, chloroplastic-like |
| Refseq | XP_022560776.1 | 0.0 | protein indeterminate-domain 4, chloroplastic-like |
| Swissprot | Q8GYC1 | 0.0 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic |
| TrEMBL | A0A0D3DAB2 | 0.0 | A0A0D3DAB2_BRAOL; Uncharacterized protein |
| STRING | Bo7g080200.1 | 0.0 | (Brassica oleracea) |
