PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5178_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 247aa    MW: 27004.6 Da    PI: 8.7699
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5178_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.71.3e-312103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Ga+g++++++++++q+++e+
  RrC5178_p2   2 SCNGCRVLRKGCNESCILRPCIqwiesADAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFKSLLYEACGRTVNPVNGAIGMLWTGNWKICQAAVET 100
                 6*********************9998666778****************************************************************999 PP

      DUF260  95 all 97 
                 +l+
  RrC5178_p2 101 VLR 103
                 876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.3541107IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-262101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSCNGCRVLR KGCNESCILR PCIQWIESAD AQGHATVFVA KFFGRAGLMS FISAVPESQR  60
PALFKSLLYE ACGRTVNPVN GAIGMLWTGN WKICQAAVET VLRGGSLRPV PEILLTHGGG  120
FAGFPPSASE EASEMCTEML KLQQNNDGSR DRNMYHHSRF SSPRSRSMLD SSPTKRKRQS  180
SELDISVNPT FPMKTLPSST RQRSGTPSMN SEESVTTTTT TFWDNTASGF RYGNGGGETS  240
KLLDLFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454565.11e-160PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN111e-124LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A291LR191e-134A0A291LR19_BRARR; Transcription factor LBD37b
TrEMBLA0A397YK281e-134A0A397YK28_BRACM; Uncharacterized protein
TrEMBLM4D6Q41e-134M4D6Q4_BRARP; Uncharacterized protein
STRINGBra012164.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-124LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]