PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB

Protein Properties

Length: 251aa MW: 27875.5 Da PI: 8.3776

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5154_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1e-16	32	79	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEde+lv +k+ G g+W++ +++ g+ R++k+c++rw +yl RrC5154_p3 32 RGPWTLEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYL 79 89****************************99**********97 PP
2	Myb_DNA-binding	44	5.1e-14	90	130	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++ G++ W++Ia +++ gRt++++k++w+++l RrC5154_p3 90 PDEEDLILRLHRLIGNK-WSLIAGRIP-GRTDNEIKNYWNTHL 130 79*************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-21	23	81	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.083	27	79	IPR017930	Myb domain
SuperFamily	SSF46689	7.35E-29	28	126	IPR009057	Homeodomain-like
SMART	SM00717	4.6E-13	31	81	IPR001005	SANT/Myb domain
Pfam	PF00249	8.8E-15	32	79	IPR001005	SANT/Myb domain
CDD	cd00167	9.79E-12	34	79	No hit	No description
PROSITE profile	PS51294	22.648	80	134	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.6E-24	82	134	IPR009057	Homeodomain-like
SMART	SM00717	2.3E-12	84	132	IPR001005	SANT/Myb domain
Pfam	PF00249	5.7E-13	90	130	IPR001005	SANT/Myb domain
CDD	cd00167	9.71E-11	90	130	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010090	Biological Process	trichome morphogenesis
GO:0010468	Biological Process	regulation of gene expression
GO:0048354	Biological Process	mucilage biosynthetic process involved in seed coat development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MLKTVDMTSS SGNRSVARKI TTPCCTKMGM KRGPWTLEED EILVSFIKKE GEGRWRSLPK 60 RAGLLRCGKS CRLRWMNYLR PSVKRGGIAP DEEDLILRLH RLIGNKWSLI AGRIPGRTDN 120 EIKNYWNTHL RKKLLSQGID PQTHKPLDAS NTHKPGEEVP GGQNLLEPNS SSHTDDSTVS 180 SGNGAGKISN SVFGDEDFGF CYDDKFSSFL NSVINDDPFD SNIPVLSQPL QTCDFIVGTS 240 SSLGHDQIPK D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-25	32	134	7	108	B-MYB
1h8a_C	3e-25	30	134	25	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018490075.1	0.0	PREDICTED: transcription repressor MYB5
Swissprot	Q38850	1e-132	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	M4EF61	1e-169	M4EF61_BRARP; Uncharacterized protein
STRING	Bra027423.1-P	1e-170	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-125	myb domain protein 5

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]