PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

SBP

Protein Properties

Length: 352aa MW: 38302.5 Da PI: 6.7726

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC507_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.9	2.2e-41	109	185	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++d+s+++eyh+rhkvC+vhsk+pvv++sg +qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ RrC507_p4 109 CLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTISGDKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQP 185 **************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.0E-32	102	170	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.847	106	183	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.09E-38	107	187	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.5E-30	109	182	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MDWNFKLSSG SFPDFDEESV PDLTPIDASV SFGGSSSSPR LEPKGEFSFD LKLGTNIVNS 60 SAAFGNTEQV TCLKWKESTA LAKPEASRSS GSTKRTRGNA TGNNQIPLCL VDGCDSDFSN 120 CREYHKRHKV CDVHSKTPVV TISGDKQRFC QQCSRFHALE EFDEGKRSCR KRLDGHNRRR 180 RKPQPDQGRK LLEFPSASHV FPTTSVGTPS SWGNGLVSVA MANGSSYGEN QISYAVSSPA 240 KPGSMFPDSS SLNSRGKQFP FLQEEVSSRT AFLGERMTSC VHDSDCALSL LSPSSSSTPH 300 LLQPPLPLSQ EAVETVFNQS GLFENASAVS DGSVISGNEI VALPQTFPFH WE

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MDWNFKLSSG SFPDFDEESV PDLTPIDASV SFGGSSSSPR LEPKGEFSFD LKLGTNIVNS  60
SAAFGNTEQV TCLKWKESTA LAKPEASRSS GSTKRTRGNA TGNNQIPLCL VDGCDSDFSN  120
CREYHKRHKV CDVHSKTPVV TISGDKQRFC QQCSRFHALE EFDEGKRSCR KRLDGHNRRR  180
RKPQPDQGRK LLEFPSASHV FPTTSVGTPS SWGNGLVSVA MANGSSYGEN QISYAVSSPA  240
KPGSMFPDSS SLNSRGKQFP FLQEEVSSRT AFLGERMTSC VHDSDCALSL LSPSSSSTPH  300
LLQPPLPLSQ EAVETVFNQS GLFENASAVS DGSVISGNEI VALPQTFPFH WE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-29	100	182	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	182	KRSCRKRLDGHNRRRRKP

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00555	DAP	Transfer from AT5G50570	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305\|PubMed:12202040}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC815960	1e-117	KC815960.1 Arabis alpina SQUAMOSA promoter binding protein-like protein 13 (SPL13) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018473029.1	0.0	PREDICTED: squamosa promoter-binding-like protein 13A
Refseq	XP_018473030.1	0.0	PREDICTED: squamosa promoter-binding-like protein 13A
Refseq	XP_018473031.1	0.0	PREDICTED: squamosa promoter-binding-like protein 13A
Refseq	XP_018473229.1	0.0	PREDICTED: squamosa promoter-binding-like protein 13A
Refseq	XP_018473230.1	0.0	PREDICTED: squamosa promoter-binding-like protein 13A
Swissprot	B9DI20	1e-172	SP13A_ARATH; Squamosa promoter-binding-like protein 13A
Swissprot	P0DI11	1e-172	SP13B_ARATH; Squamosa promoter-binding-like protein 13B
TrEMBL	A0A078HB60	0.0	A0A078HB60_BRANA; BnaC03g27870D protein
STRING	Bo3g042890.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4111	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-155	SBP family protein

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xu M, et al. Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584]