PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 279aa MW: 32245.2 Da PI: 8.3554

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5053_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.7	1.4e-50	17	141	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 pGfrFhPtdeel+ +yL++kve+k+++l e ik+vdiyk++PwdLp+ + +ekewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+v+s + + RrC5053_p2 17 LPGFRFHPTDEELLEYYLRRKVENKPIKL-ELIKQVDIYKYDPWDLPRVSNVGEKEWYFFCMRGRKYRNSVRPNRVTGSGFWKATGIDKPVYS-NLDCI 113 69*************************.99***********8778899************************************.9999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 glkk+Lv+y g+a kg+ktdW+mhe+rl RrC5053_p2 114 GLKKSLVYYLGSAGKGTKTDWMMHEFRL 141 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	53.985	16	165	IPR003441	NAC domain
SuperFamily	SSF101941	1.7E-56	16	164	IPR003441	NAC domain
Pfam	PF02365	1.2E-25	18	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005992	Biological Process	trehalose biosynthetic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006561	Biological Process	proline biosynthetic process
GO:0009718	Biological Process	anthocyanin-containing compound biosynthetic process
GO:0010120	Biological Process	camalexin biosynthetic process
GO:0042538	Biological Process	hyperosmotic salinity response
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MSGEGNKGHQ EEDETTLPGF RFHPTDEELL EYYLRRKVEN KPIKLELIKQ VDIYKYDPWD 60 LPRVSNVGEK EWYFFCMRGR KYRNSVRPNR VTGSGFWKAT GIDKPVYSNL DCIGLKKSLV 120 YYLGSAGKGT KTDWMMHEFR LPSTTKTDLS VQQAEVWTLC RIFKRVTHQR NPNIVQSNRK 180 PVITLADSCS KTSSLDSDHT SHCIKDSLSH KPHEPQLQLQ PQTQNPYWNQ LTRFGFNQPT 240 YTCHDNSFLS FGNLDGGDFI GDSASWDELR SVIDGNTKH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-53	8	165	5	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-53	8	165	5	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-53	8	165	5	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-53	8	165	5	165	NO APICAL MERISTEM PROTEIN
3swm_A	3e-53	8	165	8	168	NAC domain-containing protein 19
3swm_B	3e-53	8	165	8	168	NAC domain-containing protein 19
3swm_C	3e-53	8	165	8	168	NAC domain-containing protein 19
3swm_D	3e-53	8	165	8	168	NAC domain-containing protein 19
3swp_A	3e-53	8	165	8	168	NAC domain-containing protein 19
3swp_B	3e-53	8	165	8	168	NAC domain-containing protein 19
3swp_C	3e-53	8	165	8	168	NAC domain-containing protein 19
3swp_D	3e-53	8	165	8	168	NAC domain-containing protein 19
4dul_A	2e-53	8	165	5	165	NAC domain-containing protein 19
4dul_B	2e-53	8	165	5	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00310	DAP	Transfer from AT2G43000	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM975669	0.0	KM975669.1 Brassica napus NAC transcription factor 42.1 (NAC42.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018462920.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	1e-167	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A078IVI0	0.0	A0A078IVI0_BRANA; BnaA05g34370D protein
TrEMBL	A0A0D3BPG7	0.0	A0A0D3BPG7_BRAOL; Uncharacterized protein
TrEMBL	A0A397ZDB5	0.0	A0A397ZDB5_BRACM; Uncharacterized protein
STRING	Bo4g018490.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	1e-166	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]