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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC5024_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 162aa MW: 18115.6 Da PI: 8.7655 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.9 | 7.5e-08 | 78 | 120 | 4 | 50 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 +h+ +Er RR++i +++ L+el+P + s+ Ka L + ++Y RrC5024_p1 78 SHSLAERARREKISERLTLLQELVPGC----SRITGKAVLLDEITNY 120 79************************9....6777777777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.36E-10 | 72 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.392 | 74 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-10 | 75 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.09E-5 | 78 | 120 | No hit | No description |
Pfam | PF00010 | 1.9E-5 | 78 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MIPATVNVNR LAAHRPNLKA GSGEIVRSKR SKLDKSGSSE NLIEKCDGKC INKDDAEPPE 60 PPEDYIHVRA RRGQTADSHS LAERARREKI SERLTLLQEL VPGCSRITGK AVLLDEITNY 120 ALGNLLDQSK DFRHDTILLP RTCLDSQTHN SSRAMDLFKL RC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC183493 | 2e-42 | AC183493.1 Brassica oleracea Contig B, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018432853.1 | 2e-45 | PREDICTED: transcription factor bHLH77-like | ||||
Refseq | XP_020887229.1 | 6e-45 | transcription factor bHLH77 | ||||
Swissprot | Q9LK48 | 2e-45 | BH077_ARATH; Transcription factor bHLH77 | ||||
TrEMBL | D7L3G1 | 1e-43 | D7L3G1_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0003_2564 | 2e-44 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21408 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23690.1 | 2e-43 | bHLH family protein |
Publications ? help Back to Top | |||
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