PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

RrC5014_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 61aa MW: 7037.24 Da PI: 10.6223

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5014_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	103.5	7.5e-33	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaev++i+fs++gklye++s RrC5014_p1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.319	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.2E-41	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.15E-38	2	61	No hit	No description
SuperFamily	SSF55455	9.81E-31	2	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-33	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.8E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-33	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 61 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVSLIVFSN RGKLYEFCST 60 S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	3e-20	1	61	1	61	MEF2C
5f28_B	3e-20	1	61	1	61	MEF2C
5f28_C	3e-20	1	61	1	61	MEF2C
5f28_D	3e-20	1	61	1	61	MEF2C
6byy_A	2e-20	1	61	1	61	MEF2 CHIMERA
6byy_B	2e-20	1	61	1	61	MEF2 CHIMERA
6byy_C	2e-20	1	61	1	61	MEF2 CHIMERA
6byy_D	2e-20	1	61	1	61	MEF2 CHIMERA
6bz1_A	3e-20	1	61	1	61	MEF2 CHIMERA
6bz1_B	3e-20	1	61	1	61	MEF2 CHIMERA
6bz1_C	3e-20	1	61	1	61	MEF2 CHIMERA
6bz1_D	3e-20	1	61	1	61	MEF2 CHIMERA
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC967959	8e-86	KC967959.1 Brassica oleracea var. viridis SEP2.b (SEP2.b) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009622386.1	9e-37	PREDICTED: MADS-box protein CMB1-like
Refseq	XP_022850778.1	3e-36	MADS-box protein EJ2-like
Swissprot	Q39685	9e-37	CMB1_DIACA; MADS-box protein CMB1
TrEMBL	A0A103XKV5	3e-35	A0A103XKV5_CYNCS; Transcription factor, K-box
TrEMBL	A0A2K3MX45	3e-35	A0A2K3MX45_TRIPR; MADS-box transcription factor sepallata3 (Fragment)
TrEMBL	A0A2N9HF95	2e-35	A0A2N9HF95_FAGSY; Uncharacterized protein
STRING	cassava4.1_033924m	2e-36	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.3	2e-38	MIKC_MADS family protein