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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC4998_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 210aa MW: 23996.9 Da PI: 10.4976 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 76.6 | 3e-24 | 40 | 91 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+ +vers++dp +v +tYeg+H+h+ RrC4998_p1 40 LDDGYRWRKYGQKAVKNSPYPRSYYRCTT-------RVERSSDDPYIVMTTYEGQHTHP 91 59**************************8.......6*********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-26 | 25 | 93 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.54E-24 | 32 | 93 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.729 | 35 | 93 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.7E-32 | 40 | 92 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-20 | 41 | 91 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MLLLKIQKKQ NKSKRAKKKN QKKAREARVA FLTRSDIDNL DDGYRWRKYG QKAVKNSPYP 60 RSYYRCTTRV ERSSDDPYIV MTTYEGQHTH PFPMTRGHIA MLTSPILDRG ATRTSSSSFA 120 IPQPRYLLTQ HHQPYSNMYN NSLSMTNRSS SDGTFVNPGS SSFPGFGYDM SQASTSTTSA 180 IRDHGLLQDI LPSQIRSDTI NTRTNEEDKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-23 | 33 | 93 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-23 | 33 | 93 | 10 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430080 | 1e-172 | KF430080.1 Brassica rapa WRKY transcription factor 75 (WRKY75) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013609375.1 | 1e-120 | PREDICTED: probable WRKY transcription factor 48 | ||||
Refseq | XP_022568430.1 | 1e-120 | probable WRKY transcription factor 48 | ||||
Swissprot | Q9FGZ4 | 1e-108 | WRK48_ARATH; Probable WRKY transcription factor 48 | ||||
TrEMBL | A0A0D3E0Y5 | 1e-118 | A0A0D3E0Y5_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6DNT0 | 1e-118 | A0A3P6DNT0_BRAOL; Uncharacterized protein | ||||
TrEMBL | V5RF98 | 1e-119 | V5RF98_BRACM; WRKY transcription factor 75 | ||||
STRING | Bo9g009900.1 | 1e-119 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5624 | 26 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49520.1 | 1e-106 | WRKY DNA-binding protein 48 |
Publications ? help Back to Top | |||
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