PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

RrC49560_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 202aa MW: 22637.3 Da PI: 4.3378

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC49560_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	27.4	4.2e-09	5	35	9	39
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevavii 39 r +tf+kR g+ KA L+ L+da++a++ RrC49560_p1 5 RATTFTKRCSGLHSKAAQLCLLTDAQIAILA 35 89**************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	10.526	1	34	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.58E-10	3	63	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-8	3	40	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
KREYRATTFT KRCSGLHSKA AQLCLLTDAQ IAILATPPST HSNVSFFSFG HSSVDAVVNA 60 YLTGQRLAPV REEPMDEDIG VCMARKELGL ECWWEKESLA RSKDPRELMD AMMAIERMLS 120 RLRSREFASD HEDLNMSNET MVKSDVVSQQ GTQEDVDETL NLQAVCCSPS DDGFDKIISE 180 EEDEILAICD SFCAKEDNNN NN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018483026.1	1e-111	PREDICTED: agamous-like MADS-box protein AGL97
TrEMBL	A0A397Z8M1	1e-101	A0A397Z8M1_BRACM; Uncharacterized protein
TrEMBL	A0A3P5YM89	1e-102	A0A3P5YM89_BRACM; Uncharacterized protein
TrEMBL	M4F8M2	1e-102	M4F8M2_BRARP; Uncharacterized protein
STRING	Bra037434.1-P	1e-102	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49420.1	6e-57	M-type_MADS family protein