PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4863_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 138aa    MW: 16080.7 Da    PI: 10.5127
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4863_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-151459147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W   Ed  l ++v+ +G+ +W+ Ia++m+ gRt+k+c++rw++ 
       RrC4863_p5 14 RGHWRISEDSHLMELVAVYGPQNWNHIAEKMQ-GRTGKSCRLRWFNQ 59
                     789999**************************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.835964IPR017930Myb domain
SMARTSM007171.0E-91362IPR001005SANT/Myb domain
PfamPF002495.3E-151459IPR001005SANT/Myb domain
SuperFamilySSF466896.94E-2214105IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-231567IPR009057Homeodomain-like
CDDcd001679.33E-101758No hitNo description
SMARTSM007172565114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-868104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MNQKEEACFR VCSRGHWRIS EDSHLMELVA VYGPQNWNHI AEKMQGRTGK SCRLRWFNQL  60
DPRINKRAFN LGEEERLFAA HRGFGNKCAM IAKLFNGRTD DAFKEPQAYV LMARKLRKLI  120
KNLSTPAIII KVPVSDRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2314104494MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-231310426117MYB TRANSFORMING PROTEIN
1mse_C2e-2314104494C-Myb DNA-Binding Domain
1msf_C2e-2314104494C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478826.12e-98PREDICTED: transcription factor MYB44-like
SwissprotQ9SEZ46e-49MY105_ARATH; Transcription factor MYB105
TrEMBLA0A087GV702e-59A0A087GV70_ARAAL; Uncharacterized protein
TrEMBLR0FTE63e-59R0FTE6_9BRAS; Uncharacterized protein
STRINGA0A087GV703e-60(Arabis alpina)
STRINGXP_006292843.16e-60(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.11e-62myb domain protein 110
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]