PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4862_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 302aa    MW: 33403.5 Da    PI: 7.7948
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4862_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like42.91.1e-131321622555
     G2-like  25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  +A+Pk+i+elm+v+ L++e+++SHLQkYRl
  RrC4862_p2 132 SEAVPKRIMELMNVPRLSRENIASHLQKYRL 162
                 57****************************8 PP
2Response_reg72.81.4e-24131211109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + + +l+++l +  y +v+ +++++ al+ll+e++  +Dl+l D+ mpgm+G++ll++   e  +lp+i+++  g  +++   ++ Ga 
    RrC4862_p2  13 VLVVDDDTSCLIILEKMLLRLMY-QVTICSQADVALTLLRERKgcFDLVLSDVHMPGMNGYKLLQQVGLEM-DLPVIMMSVDGRTATVMTGINQGAC 107
                   89*********************.*******************************************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ peel +
    RrC4862_p2 108 DYLIKPIRPEELKN 121
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.84E-3310131IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.6E-3810127No hitNo description
SMARTSM004482.1E-2811123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.58212127IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2113121IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.90E-2614127No hitNo description
SuperFamilySSF466898.06E-8122166IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-14128167IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-12133162IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MTISDQFPCG LRVLVVDDDT SCLIILEKML LRLMYQVTIC SQADVALTLL RERKGCFDLV  60
LSDVHMPGMN GYKLLQQVGL EMDLPVIMMS VDGRTATVMT GINQGACDYL IKPIRPEELK  120
NIWQHVFSLI VSEAVPKRIM ELMNVPRLSR ENIASHLQKY RLYLKRLSGA ASQSKDAESM  180
ERYENIQAMV SSGQIHPQAL AALYGRPIDN HMSGGFGVWI PSDNHLVGGN VSSASNRCFG  240
ALDSPSSVAA STAIHCLSSY ANLRQEGVGF SNNADYRIRQ GNGSGLNEES WILGRPLRQR  300
KA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gwr_A2e-12121187111DNA-binding response regulator mtrA
3nhz_A1e-12121187111Two component system transcriptional regulator mtrA
3nhz_B1e-12121187111Two component system transcriptional regulator mtrA
3nhz_C1e-12121187111Two component system transcriptional regulator mtrA
3nhz_D1e-12121187111Two component system transcriptional regulator mtrA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532221e-115AK353222.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-38-P04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433868.11e-110PREDICTED: two-component response regulator ARR14 isoform X1
SwissprotQ8L9Y37e-77ARR14_ARATH; Two-component response regulator ARR14
TrEMBLA0A078JD471e-103A0A078JD47_BRANA; Two-component response regulator
STRINGBra026635.1-P1e-104(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81502736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.13e-79response regulator 14