PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4844_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 909aa    MW: 105358 Da    PI: 6.9431
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4844_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-08630653326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 + +Cr +++tG C +G +C F+H+
  RrC4844_p2 630 EIICRSYLQTGLCDHGTNCLFNHP 653
                 568********************9 PP
2zf-CCCH25.42.5e-08654673525
                 --SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  C+ff+r G+Ck G+ CkF+H
  RrC4844_p2 654 TCKFFRR-GYCKDGSDCKFIH 673
                 6**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520589.18E-295212IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.6E-206197IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM0035651401423IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.521405424IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.277627648IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012627654IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5630653IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001632652IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089649676IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-6654673IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-5654674IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4655674IPR000571Zinc finger, CCCH-type
SMARTSM003561.8655675IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MILTRSCRLK ELPDLSNATN IEKLELSYCE SLVEIPSSVS ELQKLNNLTM NNCAKLEVVP  60
TLINLASLDY LNMDGCSQLR SLPEISTHVS RIIIDDTLVE EVPASFMRFT RLQALVISGS  120
RNFKTLTHVP ECLEYLSLRW TGIEKIPDWI KDLRGLYSLD VAGCSKLKCL PQLPVSLWQL  180
NASDCESLES VSCKFKPSIL LNLNFINCFK LNQQTRGEII QQTSGERILP GREVPAEFSH  240
QATGPLLTIR RDGDSPVYKS LRFKACIVIS PSRLTEERTS IKLSCSLIGK NGGFPKKRTK  300
YFHQSPGLQS EHLCLFQEER YIELGSEILF EFSCTPSENY EIVKCGIGID SNDIDESHEG  360
KYIDEIVQCG DGIYANQIEQ VQSDSDYLSE EKIDKRIRAL KTEEFFLRGA CKEGSACKFI  420
NEKDNEAPMR QAISSKDSDG EQPMRQSQID YWKEENETRD WVLDIEKKYN RSLSQICDGI  480
VAGFKREQME IAENHKVDDA HGQEDNLQKD RKRESIEWQR REAQEMERRK SKTVLEEQRV  540
KERNLDLRSS KPDVRTDRRH KRDPRTWAGK RENNESGLRT NGPGQVRDHS DVLKQPRDVE  600
MQQQQQRSHE ETEWKRVNKL KSGYKVRPGE IICRSYLQTG LCDHGTNCLF NHPTCKFFRR  660
GYCKDGSDCK FIHAKNNEAP RLPNNTTMRQ QLSSNVKILA EFSHPKERDG AEPMPQEKEQ  720
RQAHEDPQEQ RGNTEWQRYF EMGRRDAQDI VQKYRERDIT DSRRYFEMGM RDGQEIVQRH  780
RQRETSNQQT QENVQEHRQR DIAERQRYFE MGRRDGQEIV QQHRQRETSG CQRYLGEEKS  840
EAQAQEQRLM ATTSDRKFDE RKHQTESSSM AARKAELVTS LQSVFKEDIA AGYKRMGIEH  900
GEGGSEGRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1879646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.39e-22WRKY family protein