PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TALE

Protein Properties

Length: 276aa MW: 31753.1 Da PI: 7.0352

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4793_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.7	1.7e-07	227	259	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp+++++++L +++gL+ +q+ +WF N+R + RrC4793_p1 227 WPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 259 59*****************************87 PP
2	ELK	22.8	2.1e-08	180	201	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ RrC4793_p1 180 ELKLELKQGFKSRIEDVREEIM 201 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	6.6E-19	28	72	IPR005540	KNOX1
Pfam	PF03790	1.6E-16	30	70	IPR005540	KNOX1
SMART	SM01256	5.2E-24	82	137	IPR005541	KNOX2
Pfam	PF03791	3.1E-19	86	136	IPR005541	KNOX2
PROSITE profile	PS51213	9.202	180	200	IPR005539	ELK domain
PROSITE profile	PS50071	11.823	200	263	IPR001356	Homeobox domain
SMART	SM00389	9.6E-11	202	267	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.14E-16	202	265	IPR009057	Homeodomain-like
CDD	cd00086	2.24E-11	203	264	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.0E-25	207	263	IPR009057	Homeodomain-like
Pfam	PF05920	3.0E-18	220	259	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MQETALGMIG ATVGGGDREA VLVVEQNRQM KGEIATHPMY EQLLAAHVAC LRVATPIDQL 60 PIIEAQLSRS QHLLRSYAST AVGFSHHDRH ELDNFLAQYV MVLCSFKEQL QQHVRVHAVE 120 AVMACREIEN NLHSLTDEDD FQMDFSLDTS DLSCGHDMTG FGPLLPTESE RSLMERVRQE 180 LKLELKQGFK SRIEDVREEI MRKRRAGKLP GDTTTVLKNW WQQHCKWPYP TEDDKAKLVE 240 ETGLQLKQIN NWFINQRKRN WHNSHSLASS KSKRKH

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in secondary cell wall biosynthesis. {ECO:0000269\|PubMed:15980264}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	Z29073	1e-162	Z29073.1 B.napus hd1 mRNA for homeodomain-containing protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018452547.1	0.0	PREDICTED: homeobox protein HD1-like
Swissprot	Q9FPQ8	0.0	KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBL	A0A1J3GZ74	0.0	A0A1J3GZ74_NOCCA; Homeobox protein HD1
STRING	Bostr.22157s0023.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM444	28	158

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62990.1	0.0	KNOTTED-like homeobox of Arabidopsis thaliana 7

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He JB, et al. KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis. J Integr Plant Biol, 2018. 60(6): p. 514-528 [PMID:29393579]