 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
RrC4790_p2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
HSF |
| Protein Properties |
Length: 155aa MW: 17963.2 Da PI: 10.9765 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC4790_p2 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 33.8 | 9.1e-11 | 13 | 95 | 2 | 90 |
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH.HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk.yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90
F +ly++++d++ + +isws +n++sfvv+d ++++ +L++ + +++F +L gF++v++ + eF+h+ F +g
RrC4790_p2 13 FFLQLYQVVNDRSSDPIISWSkSNNHSFVVWDLKKLHI-LLKSsSVLGRTLTAFWVKLSSNGFRSVEKGPGV-------FEFEHDDFARGP 95
8999*****************8899***********99.665427788899****************99976.......********9985 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 155 aa
Download sequence Send
to blast |
MVRKLPTRSS SSFFLQLYQV VNDRSSDPII SWSKSNNHSF VVWDLKKLHI LLKSSSVLGR 60
TLTAFWVKLS SNGFRSVEKG PGVFEFEHDD FARGPLMKKM MVKPLSERIE TEKMMVKALS 120
ERIERFDAQI KIIKCRLKAK KASLKVETLF QNLRI
|
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT1G77570.1 | 2e-17 | Winged helix-turn-helix transcription repressor DNA-binding |
