PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4790_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 345aa    MW: 39414.1 Da    PI: 5.914
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4790_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.11.3e-191561450
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                +++s + +++  R+ +i+KKA+EL +LCd+e++vi ++++g+l++++
  RrC4790_p1 15 SSYSLAATSLNSRLLTIFKKAQELTTLCDIEACVIHYGPDGELRTWP 61
                78999*****************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.3492264IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-132596IPR002100Transcription factor, MADS-box
PfamPF003193.7E-102760IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MRPPRSSSCS NSSPSSYSLA ATSLNSRLLT IFKKAQELTT LCDIEACVIH YGPDGELRTW  60
PENRDKVRDL ALRYIQLDEA KRRKKSLNLY EFLKKNKKTT MTTSSFKKRA KKNIQELKYP  120
VSDHYSVDQI NQLIQSLELS YSTLQERRRF LAAKANLEDR QHLGTQSLNP SQFTKYPQES  180
MFINQELCAY DQTSNNNFQH LCVSDHSAAQ ESGLPYQLMP YGGGYDQSMC TGNNFHVSSN  240
TQDYSVFPLE LQESVSNYGL NQLMQHEPYG FDQNMYMSDI TNNFNVVDPF LSNMLPDDFC  300
FGFQDPCGGN MVGNPSFSQD FNLDMSSSCV YENRLLLQES TLPSL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474882.10.0PREDICTED: agamous-like MADS-box protein AGL81
SwissprotQ9FLL09e-62AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLA0A078I5521e-156A0A078I552_BRANA; BnaA04g09910D protein
STRINGBo4g139560.11e-155(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.14e-63AGAMOUS-like 75
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]