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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC4790_p1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
M-type_MADS |
Protein Properties |
Length: 345aa MW: 39414.1 Da PI: 5.914 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC4790_p1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 61.1 | 1.3e-19 | 15 | 61 | 4 | 50 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
+++s + +++ R+ +i+KKA+EL +LCd+e++vi ++++g+l++++
RrC4790_p1 15 SSYSLAATSLNSRLLTIFKKAQELTTLCDIEACVIHYGPDGELRTWP 61
78999*****************************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MRPPRSSSCS NSSPSSYSLA ATSLNSRLLT IFKKAQELTT LCDIEACVIH YGPDGELRTW 60 PENRDKVRDL ALRYIQLDEA KRRKKSLNLY EFLKKNKKTT MTTSSFKKRA KKNIQELKYP 120 VSDHYSVDQI NQLIQSLELS YSTLQERRRF LAAKANLEDR QHLGTQSLNP SQFTKYPQES 180 MFINQELCAY DQTSNNNFQH LCVSDHSAAQ ESGLPYQLMP YGGGYDQSMC TGNNFHVSSN 240 TQDYSVFPLE LQESVSNYGL NQLMQHEPYG FDQNMYMSDI TNNFNVVDPF LSNMLPDDFC 300 FGFQDPCGGN MVGNPSFSQD FNLDMSSSCV YENRLLLQES TLPSL
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |