PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4713_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 291aa    MW: 32059.9 Da    PI: 10.0524
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4713_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93e-15556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ av+++G+g Wk I r  +      +R+  ++k++w+++
       RrC4713_p1  5 KLKWTEEEEEALLAAVEKHGPGKWKHILRDPQfahplSNRSNVDLKDKWRNL 56
                     689***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.637161IPR017930Myb domain
SuperFamilySSF466892.37E-16360IPR009057Homeodomain-like
SMARTSM007171.3E-10459IPR001005SANT/Myb domain
PfamPF002499.5E-12556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-15556IPR009057Homeodomain-like
CDDcd116604.35E-122256No hitNo description
SMARTSM005264.9E-14119185IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150418.91121197IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.2E-10121196IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.75E-13121200IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005385.8E-10123195IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGNQKLKWTE EEEEALLAAV EKHGPGKWKH ILRDPQFAHP LSNRSNVDLK DKWRNLSVPP  60
DIQGSIDKVR TPKIKAAALN LAASAATTSI PSPVAPPLPR TGSSDLDLDD CWNTMMVDVK  120
NAPRYDGMIF EALSALTDPH GSDVTTIFNF IQQGKHQMPA TFKRVLGSRL RRLAAQGKIE  180
KVNQLKAGTQ NFYKMNGNSF SGMRTPVVAR PKEANVKPRQ QVPKVSQGKV NHASGTAAFK  240
LAEVEKKLEM VKAAAAEIDR MIQLTEKAET ILLLAEELHE ACSQGKIVEL N
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436764.10.0PREDICTED: telomere repeat-binding factor 4-like
RefseqXP_018439463.10.0PREDICTED: telomere repeat-binding factor 4-like
SwissprotF4I7L11e-113TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A0D3DWT31e-149A0A0D3DWT3_BRAOL; Uncharacterized protein
STRINGBo8g104830.11e-150(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-106MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]