 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC4702_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
bHLH |
| Protein Properties |
Length: 525aa MW: 59946.7 Da PI: 6.5765 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC4702_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 17.4 | 7.9e-06 | 352 | 385 | 17 | 55 |
HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
N++f+ Lr+++P+ + ++K eiL +++Y+++L+
RrC4702_p1 352 NEKFSVLRTMVPTvN------EVDKEEILNNTIKYLQELE 385
9************55......8***************995 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 525 aa
Download sequence Send
to blast |
MSLTKDDGVE AARGRSSRRN SLLTKQLAVA VKSVQWSYAI FWSSSPTQSG VLEWGEGCYN 60
GEMKKRKKRN EAHYKHVLQR SSQLRTLYMC MREGDSTTTI STTHDDDDYQ NCNSRSMMLS 120
PDDLSDEEWY YIVSMSYVFS PSQCLPGRTL ATGETIWLCN AQYADNKFFS RSLLARTVVC 180
FPYLGGVIEL GVTELISEDP SLLQHIKSCL LETSKPDCSS KNFFAHQDND DDDDKKKNHE 240
IQFGISDLML DEDLHYKRTV STLLKYASDK NSHHRQPPDL VSSNSGSSFL RWKQPDSNLL 300
LKPTNLKPLR QNVLRKILHD VPLMHSVDAK RMLPNNTFGL NQDDPSVKRK ENEKFSVLRT 360
MVPTVNEVDK EEILNNTIKY LQELEERVEE LESCMGSVNF AERKRKSLND SVLIEETSGN 420
YDDSTKIDGN SGETEQVTSF RDETRLRVKL NETDVVMEVR CFYRDYIVAD IMETLSKLHM 480
DAFSVRSHTL NGFLTLNLKA KLRGAAVASV GMIKRELRRV IGESI
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4rqw_A | 3e-12 | 23 | 210 | 9 | 192 | Transcription factor MYC3 |
| 4rqw_B | 3e-12 | 23 | 210 | 9 | 192 | Transcription factor MYC3 |
| 4rs9_A | 3e-12 | 23 | 210 | 9 | 192 | Transcription factor MYC3 |
| 4yz6_A | 3e-12 | 23 | 210 | 9 | 192 | Transcription factor MYC3 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Trancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB493664 | 0.0 | AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480. |
| GenBank | AF251697 | 0.0 | AF251697.1 Arabidopsis thaliana putative transcription factor BHLH12 mRNA, complete cds. |
