PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4676_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family DBB
Protein Properties Length: 180aa    MW: 19702.1 Da    PI: 5.2954
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4676_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.62.2e-07433534
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                 C+ +e+  ++ fC  ++  lC++C ++ H
  RrC4676_p4  4 LCDACENAAAIVFCAADEAALCRSCDEKVH 33
                6*******9******************998 PP
2zf-B_box26.71.1e-085291237
    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                ++++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  RrC4676_p4 52 NAPCCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtH 91
                789***************************9996555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.395147IPR000315B-box-type zinc finger
CDDcd000211.38E-6345No hitNo description
PfamPF006435.8E-6442IPR000315B-box-type zinc finger
SMARTSM003363.7E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501198.9165196IPR000315B-box-type zinc finger
SMARTSM003362.2E-125196IPR000315B-box-type zinc finger
PfamPF006431.7E-65291IPR000315B-box-type zinc finger
CDDcd000219.07E-85696No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MRILCDACEN AAAIVFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE  60
NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR IEFPGDKPKP NNTRDNLQNQ  120
RVSANANGEA NGKTDDEMID LNANPLRVNE PSSNDQGIDV NNTNNHEPAG VGPFKRESEK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528901e-175AK352890.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-L04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449394.11e-128PREDICTED: B-box zinc finger protein 19 isoform X1
RefseqXP_018450575.11e-128PREDICTED: B-box zinc finger protein 19 isoform X1
SwissprotC0SVM51e-121BBX19_ARATH; B-box zinc finger protein 19
TrEMBLM4D2L51e-123M4D2L5_BRARP; Uncharacterized protein
STRINGBra010718.1-P1e-124(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-123DBB family protein