PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4620_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 486aa    MW: 54094 Da    PI: 6.2512
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4620_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.51e-14741135
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  RrC4620_p2  7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-10546No hitNo description
CDDcd002026.07E-16654No hitNo description
Gene3DG3DSA:3.30.50.101.0E-11741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003201.8E-12741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139195.5E-7250336IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MGKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RAEGDEVEDH  60
RVQKTMMING MSVNKKIHKR KSSSSHQESF TVKRTSFELN SGFKNEEASN RSSSGSVVSN  120
SESCDQSNAW ETTFPCKKRT CVVAVGHRPK AASSVEKLTK DLFSILQEQQ SSCLSGGSSE  180
EDLLFENESP MVIGHGSVLM RDEESEASSL LVESCKSSSS SVPSVGFEAN RGKRSLSFGG  240
KDIKQELLKR YKPQVLGRPS LPLCNIDLKD VFNFDEFIEK FTEEEQAKLM KLLPGVDSVD  300
VPDSLRSMFE CSQFKDNFSL FQQLMADGVF ETLSPSPSSS SKPEEFKRLA KLALSDPNKS  360
HLLESYYMLK EQRKVIEDSV TTTSRVTHSN RLVTIERPCE SLNQNFSETK VVMKSPKEVM  420
KIRSKHIGTE EIVENSSVSS FNNNHMSYGG PMVFSCEDND ICEEEDVLLD VPSNGSFPQA  480
ELLHMI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834930.0AC183493.1 Brassica oleracea Contig B, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452292.10.0PREDICTED: GATA transcription factor 27-like isoform X1
SwissprotQ5PP380.0GAT27_ARATH; GATA transcription factor 27
TrEMBLA0A0D3E7650.0A0A0D3E765_BRAOL; Uncharacterized protein
STRINGBo9g069320.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.10.0GATA transcription factor 27