PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC455_p7
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 210aa    MW: 22615.5 Da    PI: 9.2591
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC455_p7genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-1283128555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h+++Er RR+ri +++  L+el+P+       K +Ka++L + +eY++ Lq
  RrC455_p7  83 HSIAERLRRERIADRMKSLQELVPNT-----NKTDKASMLDEIIEYVRFLQ 128
                99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-1776137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-1276132No hitNo description
PROSITE profilePS5088816.9978127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-1780137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-983128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-1384133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080147Biological Processroot hair cell development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSMLSSLPPC WDSSLPPPHP HPPPPHSSTV DASFPDQFHQ PQESGGPSQD GLQGQGTVST  60
TSAPVARQKP RVRARRGQAT DPHSIAERLR RERIADRMKS LQELVPNTNK TDKASMLDEI  120
IEYVRFLQLQ VKVLSMSRLG GAGAVGPRLN GLTSEVGGRL DALSGPCNGL NGKGNATGSS  180
NESLRSTENR VAKLMEEDMG SAMQYLQVKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18792RLRRER
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469763.11e-134PREDICTED: transcription factor bHLH82-like
SwissprotQ9LSQ31e-123BH082_ARATH; Transcription factor bHLH82
TrEMBLA0A2L2BIN51e-131A0A2L2BIN5_BRACI; LJRHL1-like 3-like 2 (Fragment)
TrEMBLA0A398A8E31e-131A0A398A8E3_BRACM; Uncharacterized protein
STRINGXP_006401139.11e-124(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115851733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-126LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]