PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC450_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 749aa    MW: 82323.6 Da    PI: 6.1227
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC450_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.38.4e-21127182156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t++q++eLe++F+++++p++++r +L+k+l L++rqVk+WFqNrR+++k
  RrC450_p2 127 KKRYHRHTPQQIQELESMFKECPHPDEKQRLDLSKRLCLETRQVKFWFQNRRTQMK 182
                688999***********************************************999 PP
2START189.71.5e-593115191194
                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.. CS
      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.. 88 
                ela++a++elvk+a+++ep+Wvks     +++n de++++f+++k     +ea+r+sg+v+ ++  lve+l+d++ +W+e+++    +a+t++ is g  
  RrC450_p2 311 ELALAAMDELVKLAQSDEPLWVKSLdgerDELNHDEYMRTFSSNKQtgLVSEASRTSGMVIINSLALVETLMDSN-RWTEMFPcnvaRATTTDIISGGma 409
                5899*************************************99998999**************************.************************ PP

                ....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHH CS
      START  89 ....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllr 182
                    galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++++  s+++vR  +lpSg++++++sng+skvtwveh++++++++h l+r
  RrC450_p2 410 gtrsGALQLMNAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIDTVRDNSGvSAGMVR--RLPSGCVVQDMSNGYSKVTWVEHAEYDENQIHHLYR 507
                ******************************************************99999999..************************************ PP

                HHHHHHHHHHHH CS
      START 183 slvksglaegak 194
                +l++s +  g +
  RrC450_p2 508 PLLRSAITPGGR 519
                ***998765544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.64E-20112184IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-22115184IPR009057Homeodomain-like
PROSITE profilePS5007117.038124184IPR001356Homeobox domain
SMARTSM003892.6E-17125188IPR001356Homeobox domain
CDDcd000865.31E-18126184No hitNo description
PfamPF000462.5E-18127182IPR001356Homeobox domain
PROSITE patternPS000270159182IPR017970Homeobox, conserved site
PROSITE profilePS5084836.488302514IPR002913START domain
CDDcd088757.80E-100308529No hitNo description
SuperFamilySSF559611.74E-25308513No hitNo description
SMARTSM002341.9E-32311531IPR002913START domain
PfamPF018523.5E-52311515IPR002913START domain
SuperFamilySSF559611.44E-23516735No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MNFGSLFDNT TNGGSPTGAR ILSGLTYGNA STVVPGGAMA QVAASSLFTP PINTKSVYSS  60
SGLSLALEQP ERGGTSMRNN NNDNFEGSTT NNRRSREEQE HESRSGSDNV GGISGEDQDA  120
DDKPPRKKRY HRHTPQQIQE LESMFKECPH PDEKQRLDLS KRLCLETRQV KFWFQNRRTQ  180
MKTQLERHEN ALLRQENDKL RAENMSIREA MRNPICNNCG GPAMLGDVSL EEHHLRIENA  240
RLKDELDRVC NLTGKFLGHH HNHSSSLELA VGNNNGGNFS FPPDFGLPPP QQQQHQPTVV  300
NGIDQRTVLL ELALAAMDEL VKLAQSDEPL WVKSLDGERD ELNHDEYMRT FSSNKQTGLV  360
SEASRTSGMV IINSLALVET LMDSNRWTEM FPCNVARATT TDIISGGMAG TRSGALQLMN  420
AELQVLSPLV PVRNVNFLRF CKQHAEGVWA VVDVSIDTVR DNSGVSAGMV RRLPSGCVVQ  480
DMSNGYSKVT WVEHAEYDEN QIHHLYRPLL RSAITPGGRK SMLKLAQRMT VNFCSGISAP  540
SVHSWSKLTV ENVDPDVRVM TRKSVDDSGI VLSAATSVWL PASPQRLFDF LRNERMRCEW  600
DILSNGGPMQ EMAHIAKGQD QGNSVSLLRS NPMNTNQSSM LILQETCIDA SGALVVYAPV  660
DIPAMNVVMN GGDSSYVALL PSGFAVLPDG GSGDVEQRPV GGGSLLTVAF QILVNNLPTA  720
KLTVESVETV NNLISCTVQK IRDALQCES
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532530.0AK353253.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-28-B24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475317.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A3P6AA330.0A0A3P6AA33_BRACM; Uncharacterized protein
STRINGBo3g054630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]