PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC449_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 779aa    MW: 88509.2 Da    PI: 5.1204
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC449_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93e-15460504146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r  WT+eEd++l  av ++G ++W ++a++m  gRt+ qc +rw k
        RrC449_p2 460 RREWTPEEDDQLRTAVGLFGEKDWQSVANEMD-GRTGTQCSNRWKK 504
                      678*****************************.***********98 PP
2Myb_DNA-binding39.81e-12522564346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +W+ eEd++l  a + +G ++ ++Ia+ ++ gRt  qc+ rw +
        RrC449_p2 522 KWSSEEDKRLRVALTFFGAKNYHKIAQFVP-GRTQSQCRARWKD 564
                      8*****************************.***********75 PP
3Myb_DNA-binding29.22.1e-09573616246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+WT+eE  +  +av+++G  +W ++a+++   Rt kqc  rw +
        RrC449_p2 573 GSWTEEEITKYNEAVEEHGVSNWPKVASHVY-SRTSKQCSRRWET 616
                      78****************************9.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071714312403IPR001005SANT/Myb domain
PROSITE profilePS500904.67313401IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-5315331IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-5377413IPR009057Homeodomain-like
SuperFamilySSF466893.9E-8400456IPR009057Homeodomain-like
PROSITE profilePS500907.526402454IPR017877Myb-like domain
SMARTSM007170.0059406456IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-10414468IPR009057Homeodomain-like
SuperFamilySSF466892.46E-19439506IPR009057Homeodomain-like
PROSITE profilePS5129421.989455510IPR017930Myb domain
SMARTSM007176.1E-14459508IPR001005SANT/Myb domain
PfamPF002496.8E-14460504IPR001005SANT/Myb domain
CDDcd001674.95E-12462506No hitNo description
Gene3DG3DSA:1.10.10.606.7E-16469512IPR009057Homeodomain-like
PROSITE profilePS5129418.002515570IPR017930Myb domain
SMARTSM007171.0E-10519568IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-17522573IPR009057Homeodomain-like
CDDcd001672.65E-9522563No hitNo description
PfamPF002495.5E-11522564IPR001005SANT/Myb domain
SuperFamilySSF466893.52E-19546619IPR009057Homeodomain-like
PROSITE profilePS5009010.162567618IPR017877Myb-like domain
SMARTSM007173.8E-9571620IPR001005SANT/Myb domain
PfamPF002494.0E-9573617IPR001005SANT/Myb domain
CDDcd001672.09E-9574617No hitNo description
Gene3DG3DSA:1.10.10.601.2E-12574622IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MDRESMYESD VDDDEDDICE DLEELRRACI VTDSNSGGGG MHSDSENEED DFEMLRSIKT  60
QLASSTTDHP MGLLSSSSLT SEDSESDDDD DFEMLRGLKS QLALPMDDDE EDNDETLVAI  120
CKRFSCYEEN SGVEGLTFMN NYSPKKQVHA TCNEPSSEIL SRSNTCESFS EDVQGESTST  180
TEPPSLTLAA SSTTFPESAQ AFVDAIRKNR TYQKFLRTKL GEIEATIEKN EKLRKDVKII  240
DGFTVACKRR MKQQAFSQGK DPRFELISAR KPRTHHDNSS DQGKGEKTLG PLENPCVASY  300
RMVLEEYPVS VCRTNWSAKE NEDLAKGLKQ QLQETLIREA TERSSDLEGC SDDIDTILES  360
VSNLEITPEM IRQFLPKVNW DQLDIKNRSA AECEARWMSS EDPLINHGPW TAAEDDYIRL  420
VAQSKSCTDW LDVAVSLGTN RTPFQCLARY QRSLNTDILR REWTPEEDDQ LRTAVGLFGE  480
KDWQSVANEM DGRTGTQCSN RWKKSLVPSR KRVGKSNSKE AKWSSEEDKR LRVALTFFGA  540
KNYHKIAQFV PGRTQSQCRA RWKDSLDPRL NFGSWTEEEI TKYNEAVEEH GVSNWPKVAS  600
HVYSRTSKQC SRRWETLNPH LKYLKREAVR LRREATIGNF VDRESERPHL VASDFLALAE  660
RSFEPEPALK KKRKTRQKKA DAQCESEAVC ADTERQPKRR RKGLERCSGD VCSRQENENE  720
DSGKEKKQRR KHKAAAGTSS EDNSTVTTDC SQVKVGIEKL KPRRKVSAVV PIENQDAPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-204106226155MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-204106226155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022550321.10.0snRNA-activating protein complex subunit 4-like
TrEMBLA0A3P6F9J30.0A0A3P6F9J3_BRAOL; Uncharacterized protein
STRINGBra013415.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1