PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4475_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 368aa    MW: 42844 Da    PI: 9.654
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4475_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.72.9e-36261182103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+++ed+++++++swse++nsf+v+d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++k F +g+k+ll++i 
    RrC4475_p1  26 FLTKTYDMVEDSRTNDVVSWSEDKNSFIVWDPQAFSTTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDR---------WEFANKGFLRGQKHLLKTIS 113
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    RrC4475_p1 114 RRKTN 118
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.81E-3521115IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.8E-3922115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-5822115IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.5E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MAPNDPTKLS SPQPIEGLHE SGPPPFLTKT YDMVEDSRTN DVVSWSEDKN SFIVWDPQAF  60
STTLLPRFFK HNNFSSFVRQ LNTYGFRKVN PDRWEFANKG FLRGQKHLLK TISRRKTNNN  120
NQMPPPESSS QQQSLDNCCI EVGRYGLDGE MDSLRRDKQV LMMELVKLRK EQQSTKSYLT  180
STEEKLKKTE SKQHQMMRFL ARAMQNPDFL QQLMEQKEKS KDMEEAFRKK RQRTIDQGTS  240
DVVNVEYCNV NVGGGGGYGK YRNDVGSSSR FVDVKQEIYG DMTEFDMLEF DRLDMHIEGL  300
GDQFTGEEVL DRKKENRKGS KRRIMRVTVK IFWKICLKKI KILILNEMGK MLMCSLSNLV  360
IWVLVHTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-231711717131Heat shock factor protein 1
5d5v_B2e-231711717131Heat shock factor protein 1
5d5v_D2e-231711717131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216229KEKSKDMEEAFRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893270.0AC189327.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB037A01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488505.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-154HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0D3BCU00.0A0A0D3BCU0_BRAOL; Uncharacterized protein
TrEMBLA0A398A8T70.0A0A398A8T7_BRACM; Uncharacterized protein
STRINGBo3g081420.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-140heat shock transcription factor A6B