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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC4473_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 288aa MW: 32527.2 Da PI: 6.1687 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC4473_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.6 | 4.4e-18 | 79 | 132 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k
RrC4473_p1 79 KKRRLNMEQVKTLEKTFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 132
456899***********************************************9 PP
|
| 2 | HD-ZIP_I/II | 131.5 | 3.2e-42 | 78 | 169 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lk+++dalk++n+ L++++++L++e++
RrC4473_p1 78 EKKRRLNMEQVKTLEKTFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKQQFDALKADNDLLRTHNQKLQAEIM 169
69**************************************************************************************9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009744 | Biological Process | response to sucrose |
| GO:0048826 | Biological Process | cotyledon morphogenesis |
| GO:0080022 | Biological Process | primary root development |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 288 aa
Download sequence Send
to blast |
MSCNNGMSFF PSNFMIQASY EDHHPHQSSS LAPLLPSCSI PQDLNGFASF LGKRSPIEVG 60
NNMNGEEEYS DDGSHMGEKK RRLNMEQVKT LEKTFELGNK LEPERKMQLA RALGLQPRQI 120
AIWFQNRRAR WKTKQLEKDY DTLKQQFDAL KADNDLLRTH NQKLQAEIMG LKNKEQIESI 180
NLNKETEGSC SNRSDNSSDN LRLDISTAPP SVDSTTTGVH PPAQQTVGRH FFPPSPAAAT 240
TTTATMQFFQ NSSSGQSMVK EENSISNMLC AMDDQSGFWP WLDQQQYN
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 126 | 134 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353311 | 0.0 | AK353311.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-O11. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ribone PA,Capella M,Chan RL
Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
J. Exp. Bot., 2015. 66(19): p. 5929-43
[PMID:26136262] - Wang X, et al.
Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
Sci China Life Sci, 2018. 61(1): p. 79-87
[PMID:28887625] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
Front Plant Sci, 2017. 8: p. 2118
[PMID:29326734]
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