PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4447_p6

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 220aa MW: 25117.1 Da PI: 9.8691

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4447_p6	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	111.8	5e-35	36	127	1	92
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCa+Ck++r+kC+++C+l+pyfpa+++k+f++vhk+FG+snv+k++++++ee+r+++ +sl++eA +r++dPv G++g +++l+++l+ k+ RrC4447_p6 36 ACASCKHQRKKCNNECILSPYFPARKNKEFQAVHKVFGVSNVQKMVRTVREEDRTKLSESLTWEALWRQKDPVLGSYGEYRRLSEELKLYKS 127 7*************************************************************************************998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.915	35	135	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.3E-33	36	127	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MKERQEVCMT LLKEDDMMQR NSNNSNISSN SPPHQACASC KHQRKKCNNE CILSPYFPAR 60 KNKEFQAVHK VFGVSNVQKM VRTVREEDRT KLSESLTWEA LWRQKDPVLG SYGEYRRLSE 120 ELKLYKSLVH NQPLVTWNSS NNQQCVFNNS NNNKNGLAVN SSGSGGFSVV NNNGVGVNRE 180 IINGGYTSRN LQGGWGNLKQ DQRQQYYAVI NGFKQHHPPH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-17	37	128	12	104	LOB family transfactor Ramosa2.1
5ly0_B	1e-17	37	128	12	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018490366.1	1e-128	PREDICTED: LOB domain-containing protein 2-like
Swissprot	Q9LNB9	1e-107	LBD2_ARATH; LOB domain-containing protein 2
TrEMBL	V4MVQ1	1e-114	V4MVQ1_EUTSA; Uncharacterized protein
STRING	XP_006417938.1	1e-115	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10539	26	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	5e-89	LOB domain-containing protein 2