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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC441_p9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NF-YA | ||||||||
Protein Properties | Length: 253aa MW: 28400.3 Da PI: 9.2443 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 106.4 | 2.4e-33 | 115 | 171 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++I++RRq+Rak+e ekkl +ksrkpylheSRh+hA+rRpRg+gGrF RrC441_p9 115 QEPVYVNAKQYEAIMRRRQARAKAELEKKL-IKSRKPYLHESRHQHAMRRPRGTGGRF 171 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 8.1E-37 | 113 | 174 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.085 | 114 | 174 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 7.2E-29 | 116 | 171 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.0E-24 | 117 | 139 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 119 | 139 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 4.0E-24 | 148 | 171 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MHSKSDVSEV HHTSTNGSKP PSHRDENGNK EESQVTTSPQ HSGGDNSEKS QEPVNPVTTP 60 PPPHPQLVSH AVGWISSNPY QDPYYAGMIG AYPLAYVPYG GMPHSRMQLP PEMAQEPVYV 120 NAKQYEAIMR RRQARAKAEL EKKLIKSRKP YLHESRHQHA MRRPRGTGGR FAKKTNNDDS 180 RQKAGEKNNA CPTQSPTSSN SDQPEAWSDE YRTHQSEEMP SSACKRREEV DCLGQQWNNI 240 SSNHPSQARL AIK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-19 | 115 | 178 | 2 | 65 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BNU33884 | 0.0 | U33884.1 Brassica napus clone bncbf-b1 CCAAT-binding factor B subunit homolog mRNA, complete cds. | |||
GenBank | BNU33885 | 0.0 | U33885.1 Brassica napus clone bncbf-b2 CCAAT-binding factor B subunit homolog mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018487136.1 | 1e-161 | PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X1 | ||||
Swissprot | Q945M9 | 1e-127 | NFYA9_ARATH; Nuclear transcription factor Y subunit A-9 | ||||
TrEMBL | A0A398A9G7 | 1e-138 | A0A398A9G7_BRACM; Uncharacterized protein | ||||
STRING | Bo5g105110.1 | 1e-133 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13268 | 18 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20910.1 | 1e-122 | nuclear factor Y, subunit A9 |
Publications ? help Back to Top | |||
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