PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4409_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 140aa    MW: 16522 Da    PI: 8.6003
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4409_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.62.4e-2146107162
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkryk 62 
                 +W+ +e+++L+ +r+e+++++ ++k++k lWe v++km ++gf rs++qCk+kw+nl +ryk
  RrC4409_p2  46 QWSIEETRELLGIREELDQTFMETKRNKLLWEVVAAKMVDKGFARSAEQCKSKWKNLVTRYK 107
                 7************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122034.16E-2545107No hitNo description
SuperFamilySSF466897.42E-545105IPR009057Homeodomain-like
PfamPF138375.2E-1746107No hitNo description
Gene3DG3DSA:1.10.10.601.4E-446102IPR009057Homeodomain-like
PROSITE profilePS500908.03747103IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MDRSNPFYHR DHQLYHLIQQ QQLSLPPQSM TAAMDSGVGG GERIPQWSIE ETRELLGIRE  60
ELDQTFMETK RNKLLWEVVA AKMVDKGFAR SAEQCKSKWK NLVTRYKYKP CLHHYYAYFI  120
CGKLLCILET YSDQSQVMNR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893621e-141AC189362.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB045I17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475903.16e-74PREDICTED: trihelix transcription factor GT-3a-like
SwissprotQ9SDW04e-39TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A078FGM72e-54A0A078FGM7_BRANA; BnaA03g00390D protein
TrEMBLA0A0D3AZB12e-54A0A0D3AZB1_BRAOL; Uncharacterized protein
TrEMBLA0A3P5ZCN22e-54A0A3P5ZCN2_BRACM; Uncharacterized protein
TrEMBLA0A3P5ZXC62e-54A0A3P5ZXC6_BRAOL; Uncharacterized protein
STRINGBo3g001460.14e-55(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3772022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.12e-40Trihelix family protein