PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

RrC4360_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 193aa MW: 21662.8 Da PI: 4.6441

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4360_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	27.7	3.5e-09	1	27	20	46
HHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 20 ilKKAeELSvLCdaevaviifsstgkl 46 +lKKA EL vLCd e++v+ + +g+l RrC4360_p1 1 MLKKALELTVLCDNEICVLHYDRDGNL 27 59********************99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00319	5.3E-5	1	27	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	9.587	1	34	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.06E-7	1	37	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MLKKALELTV LCDNEICVLH YDRDGNLVNT MPEDQSQVTA FSTISYVKRQ GRDLRYSQDH 60 HHQTVQDQSP FLDVTPQENH NFPEASSYGF FPANAFSSSL IEEENPLMMN FIPHDLDQQE 120 SFTNLLMSGD HVSTITDQYL PSPAPSATLC SSNHHQSKFS VFVFNHETAT FTQLPNSASS 180 SFGQGFTGTL TSY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018476964.1	1e-102	PREDICTED: agamous-like MADS-box protein AGL93
Refseq	XP_018487989.1	1e-102	PREDICTED: agamous-like MADS-box protein AGL53
TrEMBL	A0A0D3CP91	2e-63	A0A0D3CP91_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6G4R6	2e-63	A0A3P6G4R6_BRAOL; Uncharacterized protein
STRING	Bo6g015480.1	4e-64	(Brassica oleracea)
STRING	Bo6g015500.1	4e-64	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11759	7	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27944.1	3e-18	M-type_MADS family protein