 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC4325_p2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
ERF |
| Protein Properties |
Length: 316aa MW: 34844.2 Da PI: 6.5066 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC4325_p2 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 56 | 9.9e-18 | 34 | 82 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+ GVr+++ +gr++AeIrdp++ + r++lg+f+ta eAa a+++a+++++g
RrC4325_p2 34 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMRG 82
56******.**********965...5*************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010102 | Biological Process | lateral root morphogenesis |
| GO:0010432 | Biological Process | bract development |
| GO:0010451 | Biological Process | floral meristem growth |
| GO:0010582 | Biological Process | floral meristem determinacy |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 316 aa
Download sequence Send
to blast |
MGFALINQNT TNATTTTTGE RRGRRSKQAE PGRFLGVRRR PWGRYAAEIR DPTTKERHWL 60
GTFDTAHEAA LAYDRAALSM RGTQARTNFV YTPNDVHTIL TNPNLHSLIV SPYNNQSLLP 120
NSSPQFVIDH HPHYQNYHHH QQPKHTLPQT VLPAASFKTP VRNQNADIQA FGNSPQNSSS 180
NGSLSSSLEE ENNFFSLQGS NSSNNSGYLD CIVPNHCLKP PPETTTNQNQ TGAGFTTPAS 240
KASESYEGFS NSYFQDVDMM MEFGSCDLSA MITNYGAGTS ISMEDYAIME PQSFSSSSLA 300
AFGDVVADTT GFYSLY
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972, ECO:0000269|PubMed:23749813}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:23749813}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC069328 | 0.0 | AC069328.1 Genomic Sequence For Arabidopsis thaliana Clone T28N17 From Chromosome V, complete sequence. |
| GenBank | AY560873 | 0.0 | AY560873.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g18560) mRNA, complete cds. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
