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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
RrC4325_p1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
C3H |
| Protein Properties |
Length: 347aa MW: 37796.5 Da PI: 8.8572 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC4325_p1 | genome | MSU | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 37 | 5.6e-12 | 45 | 69 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++ C +++rtG C yG+rC+F+H++
RrC4325_p1 45 EPDCIYYLRTGVCGYGSRCRFNHPR 69
589********************96 PP
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| 2 | zf-CCCH | 37.7 | 3.5e-12 | 90 | 115 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++ C++f+rtGtC++G++Ck++H++
RrC4325_p1 90 GQPVCQHFMRTGTCRFGATCKYHHPR 115
5789********************96 PP
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| 3 | zf-CCCH | 40.3 | 5.1e-13 | 138 | 162 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
++++C++++rtG+Ck+G++C+F+H+
RrC4325_p1 138 GEKECSYYMRTGQCKFGSTCRFHHP 162
7899********************9 PP
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| 4 | zf-CCCH | 41.6 | 2.1e-13 | 285 | 310 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+++++C++f+rtG Ck+G++C+F+H+
RrC4325_p1 285 PGQPECQYFMRTGDCKFGNSCRFHHP 310
5789*********************9 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 7.7E-5 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.573 | 42 | 70 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.1E-9 | 45 | 69 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.7E-6 | 46 | 71 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 48 | 69 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.3E-6 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.948 | 88 | 116 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.22E-6 | 90 | 116 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 7.8E-10 | 90 | 115 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.2E-5 | 93 | 115 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.356 | 136 | 164 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.3E-6 | 136 | 163 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.7E-10 | 138 | 162 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.7E-6 | 139 | 163 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 9.3E-5 | 142 | 161 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.7E-7 | 284 | 311 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.07 | 284 | 312 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.5E-10 | 286 | 310 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.09E-6 | 288 | 312 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.0E-5 | 290 | 310 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 347 aa
Download sequence Send
to blast |
MERYGRAGEQ GSRSDPSLET GLEASMWRLG LGGGGGESYP ERLSEPDCIY YLRTGVCGYG 60
SRCRFNHPRN RAPVLGGLRT EAGEFPERMG QPVCQHFMRT GTCRFGATCK YHHPRQGGRD 120
SFTTPVSLSY MGFPLRPGEK ECSYYMRTGQ CKFGSTCRFH HPVPPGVQAP SPQQQQLSTG 180
SAIYPPLQSQ SLPSSQQFGV AIPRPQLLPG SYLQSPYGYN QMLLPPPGMV PYSGWNPYQA 240
SISATPSPGT QPSMGSSSIY GIRPLSPPAP AYPSSNNEQT FPQRPGQPEC QYFMRTGDCK 300
FGNSCRFHHP LEAASPKGVS LSHIGLPLRP SAESKNGDSA SIEVKTS
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