PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC4314_p4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 274aa MW: 31460.9 Da PI: 5.7529 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 93.7 | 3e-29 | 36 | 163 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlskkg 97 ppG++F P++++l+v+yLk+ ++++k++ +v i++v+iy+++P++L + vk+++kew+f ++r k +++ +k++nr + g+W+a + +e+++ ++ RrC4314_p4 36 PPGYKFVPSEDDLIVHYLKPFLRSSKNPPPNVpIHRVNIYESNPERLSkEYVKGNDKEWFFITERTKMHESgNKKQNRCDNGGFWRARSSLEELKT-RN 133 9**********************9998777888**************9568899999********9999983567889999*************99.77 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyr 127 + +++L y g++++g+k++W+m ey RrC4314_p4 134 GVAFSRRVLEHYMGNNQNGVKSEWLMYEYL 163 7899*************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-34 | 32 | 189 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.648 | 35 | 189 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-14 | 36 | 162 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MAMPPRNNCK AEPQPSSSSA ADNFSRTPPT KPTTFPPGYK FVPSEDDLIV HYLKPFLRSS 60 KNPPPNVPIH RVNIYESNPE RLSKEYVKGN DKEWFFITER TKMHESGNKK QNRCDNGGFW 120 RARSSLEELK TRNGVAFSRR VLEHYMGNNQ NGVKSEWLMY EYLTESSPGD KSNGDNKRVD 180 YALCKIYMTS RGMKRKAEEE EGGEVSQEVD QHCNPAVQQT NLPPQPCPFS SDEFREMFNF 240 PDDIFTGFVD LNQLLDEDTE SNNSCYLKNS SKED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-18 | 27 | 187 | 12 | 166 | NAC domain-containing protein 19 |
3swm_B | 3e-18 | 27 | 187 | 12 | 166 | NAC domain-containing protein 19 |
3swm_C | 3e-18 | 27 | 187 | 12 | 166 | NAC domain-containing protein 19 |
3swm_D | 3e-18 | 27 | 187 | 12 | 166 | NAC domain-containing protein 19 |
3swp_A | 3e-18 | 27 | 187 | 12 | 166 | NAC domain-containing protein 19 |
3swp_B | 3e-18 | 27 | 187 | 12 | 166 | NAC domain-containing protein 19 |
3swp_C | 3e-18 | 27 | 187 | 12 | 166 | NAC domain-containing protein 19 |
3swp_D | 3e-18 | 27 | 187 | 12 | 166 | NAC domain-containing protein 19 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018432541.1 | 1e-171 | PREDICTED: NAC transcription factor 29-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2793 | 15 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56530.1 | 4e-51 | NAC domain containing protein 64 |