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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC42628_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 85aa MW: 10283.7 Da PI: 9.7402 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.1 | 4.8e-21 | 4 | 57 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++t+eq++ Le F ++++ e++ ++A++lgL+ rqV vWFqNrRa++k+ RrC42628_p1 4 KRKLTDEQVNMLEMRFGDEHKLESERKDKIAAELGLDPRQVAVWFQNRRARWKN 57 4589************************************************96 PP | |||||||
2 | HD-ZIP_I/II | 119.2 | 2.2e-38 | 3 | 84 | 2 | 83 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 +kr+l++eqv++LE+ F e+kLe+erK ++a eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+++ +++rLe+e RrC42628_p1 3 RKRKLTDEQVNMLEMRFGDEHKLESERKDKIAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNKLKNSHDNVVGDKCRLESE 84 8******************************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.876 | 1 | 58 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-19 | 1 | 62 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.02E-13 | 3 | 59 | No hit | No description |
Pfam | PF00046 | 2.6E-18 | 4 | 57 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.17E-18 | 4 | 68 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-21 | 5 | 65 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.2E-6 | 29 | 38 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 33 | 56 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.2E-6 | 38 | 54 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MLRKRKLTDE QVNMLEMRFG DEHKLESERK DKIAAELGLD PRQVAVWFQN RRARWKNKRL 60 EEEYNKLKNS HDNVVGDKCR LESEV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1 | 6 | LRKRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189549 | 1e-103 | AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481857.1 | 1e-51 | PREDICTED: homeobox-leucine zipper protein ATHB-40-like isoform X2 | ||||
Swissprot | O23208 | 4e-52 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A178V092 | 1e-49 | A0A178V092_ARATH; HB40 | ||||
TrEMBL | A0A1P8B6F4 | 1e-49 | A0A1P8B6F4_ARATH; Homeobox protein 40 | ||||
STRING | AT4G36740.1 | 2e-50 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2208 | 26 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 2e-54 | homeobox protein 40 |
Publications ? help Back to Top | |||
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