PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4252_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 340aa    MW: 37846.3 Da    PI: 8.8635
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4252_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.4e-18189243256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++k+q   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  RrC4252_p3 189 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTK 243
                 678899***********************************************98 PP
2HD-ZIP_I/II128.62.6e-41189279192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlsk+q+++LE+sF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +lk
   RrC4252_p3 189 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELR-ALK 279
                  69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-17173239IPR009057Homeodomain-like
SuperFamilySSF466893.8E-18180246IPR009057Homeodomain-like
PROSITE profilePS5007116.908185245IPR001356Homeobox domain
SMARTSM003892.5E-16187249IPR001356Homeobox domain
CDDcd000861.11E-15189246No hitNo description
PfamPF000462.3E-15189243IPR001356Homeobox domain
PROSITE patternPS000270220243IPR017970Homeobox, conserved site
PfamPF021832.8E-11245279IPR003106Leucine zipper, homeobox-associated
SMARTSM003408.1E-26245288IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MELALCLGDN TNKFSFMEKP SKTNNNPSAS STSTSDKDLG FNMGLDVLGF GGHRSLSSSS  60
SPSAEDEKKK NKRKPTPKAN DSDGFRVSSS VDPSLQLQLH FPWLPENSRR GGRMLSGAAT  120
VPEEEEEAAL SMSVSPPDSV TSSFRLDFGI KSYGYERRNN KRDIENDEVE RSTSRASNED  180
NDDDNGATRK KLRLSKDQSA FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA  240
RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRALKT SSPFCMQLPA TTLTMCPSCE  300
RVATSVSQPS TSAAHNIDLS KSSFHSPLIP VKPGTGKQVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16674EKKKNKRKP
2187193TRKKLRL
3237245RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442295.10.0PREDICTED: homeobox-leucine zipper protein HAT14
SwissprotP466651e-177HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A0D3EH950.0A0A0D3EH95_BRAOL; Uncharacterized protein
STRINGBo9g175900.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-164homeobox from Arabidopsis thaliana