 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
RrC424_p4 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
G2-like |
| Protein Properties |
Length: 238aa MW: 27272 Da PI: 8.7249 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC424_p4 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 107 | 1e-33 | 23 | 77 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kprlrWt eLHerFv+av++LGG++kAtPkti+++m vkgLtl+h+kSHLQk+Rl
RrC424_p4 23 KPRLRWTAELHERFVDAVTHLGGPDKATPKTIMRVMAVKGLTLYHLKSHLQKFRL 77
79****************************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 238 aa
Download sequence Send
to blast |
MMQSREERRA ESPSGLVLTT DPKPRLRWTA ELHERFVDAV THLGGPDKAT PKTIMRVMAV 60
KGLTLYHLKS HLQKFRLGKQ PHKEHSHGHS INIRDSNKAV NHRSMTHAAS MLDLQRNVVF 120
TTPQIIGRNM NEMQMEVKRR IEEEVEVERQ VNQRIEAQGK YMESMLEKAC ETQEASLTKD 180
YSTLFFNNTS PLPILWFEDH FPSASSMDST LNLSDINPNF SLQDSLSSIT KNRTVCLG
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4r_A | 5e-20 | 23 | 76 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 5e-20 | 23 | 76 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 5e-20 | 23 | 76 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 5e-20 | 23 | 76 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189335 | 1e-146 | AC189335.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039A19, complete sequence. |
