PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC4247_p4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 193aa MW: 21006.8 Da PI: 6.2664 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.5 | 1.2e-13 | 81 | 122 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++rRR++iN+++ L++l+P++ K +Ka++L +A+eY+k+Lq RrC4247_p4 81 DKRRRSKINEKMKALQKLIPNS-----NKTDKASMLDEAIEYLKQLQ 122 59*******************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.9 | 72 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.9E-14 | 78 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.5E-11 | 81 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-16 | 81 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-16 | 81 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.45E-14 | 82 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MGSSDDGHSL PTPCSSDELS SILRQILSRA PTTQPSSPPK RNVSSAEMFD RNFLFVSGGA 60 VSTAAGYAVA ENGEDKCAFE DKRRRSKINE KMKALQKLIP NSNKTDKASM LDEAIEYLKQ 120 LQLQVQTLAV MNGLGLNPLR LPPVRAPTQT RMISGTLEQD LNFETLLGAP HSLANHEPSE 180 ATQEMCFSTA TLL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the dehiscence of fruit, especially for the separation of the valve cells from the replum. Promotes the differentiation of a strip of labile nonlignified cells sandwiched between layers of lignified cells. {ECO:0000269|PubMed:11747817}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018464181.1 | 1e-126 | PREDICTED: LOW QUALITY PROTEIN: transcription factor ALC-like | ||||
Swissprot | Q9FHA2 | 3e-88 | ALC_ARATH; Transcription factor ALC | ||||
TrEMBL | A0A1J3JKY3 | 5e-95 | A0A1J3JKY3_NOCCA; Transcription factor ALC (Fragment) | ||||
STRING | XP_006393909.1 | 1e-95 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13982 | 17 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67110.1 | 2e-80 | bHLH family protein |
Publications ? help Back to Top | |||
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