PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4247_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 337aa    MW: 38267.9 Da    PI: 4.9244
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4247_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF412.5e-131058250
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                +i ++  r+ +f kR++gi+KK +EL +LC+++++ +i s +++  e+s
  RrC4247_p1 10 PITDDFARKQSFRKRKKGIIKKVNELATLCGVKACAVINSCDNTEPEFS 58
                7899999*********************************999888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-17160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.596161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-20395IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-7323IPR002100Transcription factor, MADS-box
PfamPF003196.5E-141152IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MPRGKLKLEP ITDDFARKQS FRKRKKGIIK KVNELATLCG VKACAVINSC DNTEPEFSPS  60
KEGAREVCLK FLDVLPEQRY KKMYDQERYL WERIQKEREK LMRIDEENRE IEVQEVMFDL  120
LKGKAMSPHH YSDPGFIEAL NLIIDDNVNK LTYRTEFLEP IGALNVAVTD ASGPVVGDVD  180
PFAVGTESLV SNPTEVYHHM RQYDGMDMSV NEQAHGGSND HVHHQTMNLQ EPFQYQSLGN  240
FYDQTQPRFN GSSQDMYTCL SLDQGQSSNQ YPNQHQSLLM GQPQQMSDVQ ANVASMDDNS  300
YCYHQLPITS QMPVTTTTTA APAADLSDHS IDNKCLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454230.10.0PREDICTED: agamous-like MADS-box protein AGL36
RefseqXP_018454231.10.0PREDICTED: agamous-like MADS-box protein AGL36
TrEMBLA0A3P6B0221e-146A0A3P6B022_BRACM; Uncharacterized protein
STRINGBra020552.1-P1e-144(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14795620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.18e-42AGAMOUS-like 36