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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC422_p2 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
MIKC_MADS |
Protein Properties |
Length: 230aa MW: 26539.5 Da PI: 7.1034 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC422_p2 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 89.5 | 1.7e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien + rq+tfskRr+g+lKKA+ELSvLCda+va i+fs++gklye++s
RrC422_p2 9 KRIENLTSRQITFSKRRKGLLKKAHELSVLCDAQVAAIVFSQKGKLYEFAS 59
79***********************************************86 PP
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2 | K-box | 51.1 | 5.8e-18 | 83 | 173 | 9 | 96 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk...ekelqeenkaLrk 96
+ee++ + l++e++ + ++ie Lq R+l+G+dL+s+s++eL+++ q+e+sl+ iRs+K +l +++ el+ ++el +e+++L++
RrC422_p2 83 QEEKDVQDLKNEVTVMVNRIELLQLHCRKLMGQDLGSCSVEELNEITIQIERSLTLIRSRKAKLHEDEVGELKAEiagKRELVNEKTKLHE 173
678999******************999*********************************************9763335666666666665 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MVRGKIEIKR IENLTSRQIT FSKRRKGLLK KAHELSVLCD AQVAAIVFSQ KGKLYEFASS 60 DMKKMMEQCE IYRSGYFHAE RLQEEKDVQD LKNEVTVMVN RIELLQLHCR KLMGQDLGSC 120 SVEELNEITI QIERSLTLIR SRKAKLHEDE VGELKAEIAG KRELVNEKTK LHEMENNLLS 180 FQFEEKPLWM QSRSLESEKN ASSSSSSACE NMNISDVETD LFIGLHRSQV
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Functional Description ? help
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Source |
Description |
UniProt | MADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC232542 | 1e-63 | AC232542.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005L20, complete sequence. |