PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC41_p5

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 191aa MW: 20886.8 Da PI: 5.6313

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC41_p5	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.8	3.3e-42	36	135	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+C ++Cvlapyfp ++p+kf ++h++FGasn++kll++lpe++r+da++s+vyeA ar+rdP+yG++g i +lq+q+++l+a+la+++ e RrC41_p5 36 PCAACKILRRRCGDKCVLAPYFPPTEPAKFTIAHRVFGASNIIKLLQELPESQRTDAVNSMVYEAGARIRDPIYGCAGAIYNLQRQVSELQAQLAKAQVE 135 7**********************************************************************************************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.973	35	136	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-42	36	133	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MLDMEIKCDA SAAIVSASPT SSPPLPQLSP RLVLSPCAAC KILRRRCGDK CVLAPYFPPT 60 EPAKFTIAHR VFGASNIIKL LQELPESQRT DAVNSMVYEA GARIRDPIYG CAGAIYNLQR 120 QVSELQAQLA KAQVEIVSMQ LQRSNLLELI HNMDQPNQGQ HNISSDSSFG NCDEFISSPE 180 SDESGPYQAH L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-42	35	137	10	112	LOB family transfactor Ramosa2.1
5ly0_B	8e-42	35	137	10	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018480879.1	1e-126	PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 1-like
Swissprot	Q9SK08	7e-89	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A291LQX5	1e-111	A0A291LQX5_BRARR; Transcription factor LBD1a
TrEMBL	A0A397Z1P4	1e-111	A0A397Z1P4_BRACM; Uncharacterized protein
STRING	Bo5g008590.1	1e-111	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	6e-88	LOB domain-containing protein 11