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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
RrC4162_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
NAC |
| Protein Properties |
Length: 310aa MW: 35882.3 Da PI: 8.9401 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC4162_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 155.6 | 2.1e-48 | 25 | 153 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97
pGfrFhPtdeelv +yL kkv kk +++e+i+++diy+++PwdLp + +++eke yfF+kr +ky++++r+nr+t sg+Wkatg dk+++ ++
RrC4162_p1 25 LPGFRFHPTDEELVGFYLSKKVLLKKsSKIDEIISQIDIYQFDPWDLP-RSRHTEKESYFFCKRGRKYRNSTRPNRVTGSGFWKATGIDKPIYPDgtSN 122
59*******************887774778888***************.5566789*************************************986667 PP
NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128
+++glkktLv+y g+a kg+ktdW+mhe+rl
RrC4162_p1 123 AVIGLKKTLVYYLGSAGKGSKTDWMMHEFRL 153
77***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 310 aa
Download sequence Send
to blast |
MEEMMGTWAK RREEQEVQEE QVLKLPGFRF HPTDEELVGF YLSKKVLLKK SSKIDEIISQ 60
IDIYQFDPWD LPRSRHTEKE SYFFCKRGRK YRNSTRPNRV TGSGFWKATG IDKPIYPDGT 120
SNAVIGLKKT LVYYLGSAGK GSKTDWMMHE FRLPTANDTI PGGSNHRSPT PSSLLHAEVW 180
TLCRIFKRNV SGKKYTPDWK ELASGERVKP KQSKYQEAAY ISFGDNESRT NKTNVMESKE 240
NNEKNVFQLH QTPHQHQPIP MEYTSSTKVD NTVPHFSNDN MDDTNYVNWD ELQSVVEFAF 300
GPSNRCPHIN
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB026645 | 5e-88 | AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6. |
| GenBank | CP002686 | 5e-88 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
| Publications
? help Back to Top |
- Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
Plant Signal Behav, 2016. 11(6): p. e1181245
[PMID:27159137] - Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
Nat Plants, 2016. 2: p. 16013
[PMID:27249348] - Shahnejat-Bushehri S, et al.
Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
Front Plant Sci, 2017. 8: p. 214
[PMID:28326087] - Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
Plant J., 2017. 92(6): p. 1106-1120
[PMID:29032592] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
Front Plant Sci, 2017. 8: p. 2118
[PMID:29326734]
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