PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 304aa MW: 34550.2 Da PI: 6.7865

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4110_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	125.6	4.1e-39	2	101	32	129
NAM 32 evikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 evi+evd++k+ePwdL++++k ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + +++g++ktLvfykgrap+g+ktdW+mheyr RrC4110_p2 2 EVIREVDLNKLEPWDLQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRN-SYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYR 99 589***********964444222455*********************************9.8999************************** PP NAM 128 le 129 le RrC4110_p2 100 LE 101 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	46.063	1	123	IPR003441	NAC domain
SuperFamily	SSF101941	1.28E-44	2	123	IPR003441	NAC domain
Pfam	PF02365	3.0E-16	26	100	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MEVIREVDLN KLEPWDLQER CKIGSTPQNE WYFFSHKDRK YPTGSRTNRA THAGFWKATG 60 RDKCIRNSYK KIGMRKTLVF YKGRAPHGQK TDWIMHEYRL EDADDPEGNP SEDGWVVCRV 120 FMKKNLFKVV NDGGSSINSA DQYNHDASNN NNKLQARSFM HGDSPYQLVR NHGATTFELN 180 KPDLALHQYP PIFHKPPSLG FDYSSGLQRD CESAASEGLQ YQQACEQGLE VGTCETGANH 240 NHQQGLGEWS MMDRLVTCHV GNEDSSRGIR FEDGNNNSSA VVQPVSTSNQ LSLPSEMDFW 300 GYSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-39	1	125	46	167	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-39	1	125	46	167	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-39	1	125	46	167	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-39	1	125	46	167	NO APICAL MERISTEM PROTEIN
4dul_A	3e-39	1	125	46	167	NAC domain-containing protein 19
4dul_B	3e-39	1	125	46	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY133681	0.0	AY133681.1 Arabidopsis thaliana clone C103095 putative NAM/NAP (At4g10350) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018456850.1	0.0	PREDICTED: protein BEARSKIN2-like
Refseq	XP_018456855.1	0.0	PREDICTED: protein BEARSKIN2-like
Swissprot	Q9SV87	0.0	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A397ZYP7	0.0	A0A397ZYP7_BRACM; Uncharacterized protein
STRING	Bra000709.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5213	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	0.0	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]